Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00557 ATGGATCCGACCAAGAAGCGTAAGCTCGATGAGAACGGATTCGGCGATTCCGACCCTCTCAAACTCTCTCCTTCCGAGGCGCGAAAACTAATCGAGCGCTTCACCCCGGAGCAGCTTCTCGACATCCTTCAGGACGCGGTGGCGCGCCACCCCGACGTGCTCTCTTCCGTGCGCGCCGTGGCGGATCCCGACGTGTCGCAGCGGAAGCTCTTCGTGCGCGGCCTCGGGTGGGATACCACCACCGACGGCCTCCGCTCGCTCTTCTCAGCCTACGGCGAGCTCGAGGAGGCCGTCGTGATCGTCGACAAGGCCACTGGAAAGTCCAAGGGCTACGGCTTCGTTACGTTCAGGCACGTGGACGGCGCGTTTCTTGCCCTCCGCGAACCCAGCAAGCGCATCGATGGCCGCGTGACCGTCACGCAGCTCGCCGCCGCAGGGAACTCTGCTTCGAACGCCAACGCCACCGATGTCGCGATCAGGAAGATCTACGTCGCCAACGTGCCGCCCGACCTCCCCGCGGACAAGCTCCTTGCGCATTTTTCCGTGTACGGTGAGATCGAAGAGGGACCGTTAGGTTTTGATAAGCAAACTGGAAAATCTAAGGGATTTGCGCTTTTTGTTTATAAGACTCCGGAAGGGGCTCAAGCTGCGTTATTGGATCCCGTGAAGACTGTTGAAGGAAGGCAACTGAGTTGTAAATTGGCGATAACGGATGGGAAGCAGGGTAAGCGAGCTGGGCCGGATTCAGGCCAGGCCCATGGGAATGTTCAGCACGGACATGGAGATGGAGTGGGGACTGGAATGGGAATACCTCCTGCGGCGGGGTCTGGGCCCGGGCAGTATGGCGGCCCCCAGTATGGAGGTCCGGTTGGGTTGGGCTCTTATGGTGGGTTTGGTGGACAGCCTCCACTGGGGAACCATAATCATCCTCTGAATTCGTCCAACCCCGTTCCTGGGTCTATGGCGGGTGCTGGCGGATACGGTGGTGGGATGGGTGGGCCTTATGGTGGATACGGTGCGCCGGGCTCGACGGGATTTGGTGGTGCAGCTGGGTTAGGAGCATCTGGCGGAGGTGCCGGTGTTGGTGGTGGGCTTGGAGGAGCTGCTGGGGGGCTTGGTGGCGCTGGGGGTGGCTCTTTGTATAGGTTGCCGGGTTCTGGCGGCATGCCTGCAGGTGGTGGAGGATATCCGGAGGGTGGTCATTATGGTTTATCAGCTTCGGCTGGATACCAGAACCAGCATCATCCTCCTTCTGGTGCTTCTCCTGTTCCTAGGGTTCCACCTGGTTCGATGTACCCCAATGTGCCCCCTTACTACTAA 1320 0.6008 MDPTKKRKLDENGFGDSDPLKLSPSEARKLIERFTPEQLLDILQDAVARHPDVLSSVRAVADPDVSQRKLFVRGLGWDTTTDGLRSLFSAYGELEEAVVIVDKATGKSKGYGFVTFRHVDGAFLALREPSKRIDGRVTVTQLAAAGNSASNANATDVAIRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALLDPVKTVEGRQLSCKLAITDGKQGKRAGPDSGQAHGNVQHGHGDGVGTGMGIPPAAGSGPGQYGGPQYGGPVGLGSYGGFGGQPPLGNHNHPLNSSNPVPGSMAGAGGYGGGMGGPYGGYGAPGSTGFGGAAGLGASGGGAGVGGGLGGAAGGLGGAGGGSLYRLPGSGGMPAGGGGYPEGGHYGLSASAGYQNQHHPPSGASPVPRVPPGSMYPNVPPYY 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00557 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 237 IPR000504 GO:0003723
Spst11g00557 439 MobiDBLite consensus disorder prediction 1 15 - -
Spst11g00557 439 Gene3D - 151 270 IPR012677 -
Spst11g00557 439 SUPERFAMILY RNA-binding domain, RBD 150 267 IPR035979 GO:0003676
Spst11g00557 439 MobiDBLite consensus disorder prediction 1 22 - -
Spst11g00557 439 SUPERFAMILY RNA-binding domain, RBD 56 143 IPR035979 GO:0003676
Spst11g00557 439 PANTHER GEO13361P1-RELATED 51 344 - -
Spst11g00557 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 219 IPR000504 GO:0003723
Spst11g00557 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 137 IPR000504 GO:0003723
Spst11g00557 439 MobiDBLite consensus disorder prediction 420 439 - -
Spst11g00557 439 SMART rrm1_1 161 233 IPR000504 GO:0003723
Spst11g00557 439 SMART rrm1_1 69 141 IPR000504 GO:0003723
Spst11g00557 439 MobiDBLite consensus disorder prediction 238 317 - -
Spst11g00557 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 145 IPR000504 GO:0003723
Spst11g00557 439 FunFam UBP1-associated protein 2C isoform A 153 301 - -
Spst11g00557 439 Gene3D - 44 150 IPR012677 -
Spst11g00557 439 FunFam UBP1-associated protein 2C isoform A 51 152 - -
Spst11g00557 439 MobiDBLite consensus disorder prediction 404 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00557 Spst-Chr11 27551428 27552747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00557 156 235 C2H2 Transcription Factor Family AT2G19380 40.000 1.06e-10 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00557 11 27551428 27552747 Spst11g00557 11 27551428 27552747 ECH