Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00549 ATGTCACATTCCGGGAAACCCGTCTCCGAGTTAGGGCTCAGCGAGCGGTTGCGCGACTCACTGAGTTGTTCCGACGATTCCAACAAGCCCGATTTCCGAGAACTCGATTTGGGTTCGCCGGTTTCCACATTGCGGCCACGTCAGCAGTTCCACCACCACAGTGCGCCCACCACGAGTAGTAACAGTAGCAGTAGTAGCGGCGGCTCTAGCGGGTCGGTTCCGGGGCAGAGCAACCCGGTTTCGAGAAGATCCCATTCCGGCGAGTTGTCCGGGTCGAGTGAGACTAATAGTCCGACTCGGGTGTCCAAACCGGGTCATCGAAGATCTAGTTCTGGTCAAAGTCTGACCCAGAGTCAGAGATCCCCATCATCGTCTTCCTCCGCTGCTGTGAGTTCACCCCCGCCGAATGTTCTTCCGGCCGGGAACATTTGTCCGTCCGGGAGGGTTCTAAAGCCGGCGACGGTGGCGGCGGCAGCGAGTCGGAGCTCAAGGAGTGATGTATTAGGCTACGGCACGGGGAATTACGGCCACGGGAGCATAATGCGCGGCACCAAGGGTGGCGGTGGTGATGCGGCGAGTGTTAAGATCGGTGGCGGCGATTCGGGGAAGCGCGTGGATCCGGAGGAAGTGAAGAGGATGGGCAATGAGGAGTATAAGAGAGGGCACTTTGGTGAGGCATTGTGTTTGTATGATCGGGCAATTGCGATGTCACCGAGCAATGCTGCTTACCGGAGCAACCGGGCGGCAGCGTTGACCGGATTGGGACGGCTGCCGGAGGCGGTGAGGGCGTGTGAGGAGGCTGTGGGGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGCAATGCTGTTTCTAAGGTTAGGACTGGTTGAGGATGCAAGGAAGCACCTTTACTATCCCGGGCTGCACCCAGATCTTGCTGAATTGCAGAAGTTGCAAAATGTAGAAAAACATATAAACAAATGTGAAGATGTTCGGAGGGTACGAGATTGGAACAGCGTACTGAGGGAGGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTAGTGTTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTCTCAAGCTACACCAGATAGATGATGCTGAATTGTGTTTATCACGGATTCCTAAAAGCGAGCCTCATCCCGGTTCCTTATCCCAGGCAAGGTTTTTTGGGATGTTTTCTGAGGCTTACTGCTACTTTGTGAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAATCAGATTGACCCCCGAAATGTTGAAGTTGCTGTTTTGGTCAAGAATGTGAGAATTGTGGCTAGAGCTAGACTGCGTGGCAATGATCTTTTTAAATCAGAAAGGTTCACTGAGGCGTGCTCAGCGTATGAGGAAGGTTTGAGGCTTGACCCGTCAAACTCTGTTCTCTATTGTAATAGAGCAGCATGTTGGTTTAAGCTTGGGAAATGGGAAAGATCAATTGACGATTGCGATCAAGCTCTACGCATCCAACCAAATTACACAAAAGCCATTCTTCGAAGGGCTGCCTCAAATAGCAAGTTAGAAAGATGGGAAGAAGCAATAAAGGATTATGAACTTTTGCGGAGAGAACTACCAGATGACAGTGATGTTTCAGAAAGCCTGTTTCATGCTCAAGTAGCATTAAAGAAATCTCGCGGGGAAGATGTACAAAATTTAAAGTTTGGTGGTGAAGTGGAGGAGATATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCCGTTGTCCTTTTTGAAACTGCATCAAACTTGCAATGTAAGCAGATATCTCCTTTCGTGGTTACCCTATGCAGTCGCTATCCATCTATTAACTTTCTTAAGGTGGATATCCTAGCAAGCCCCGCAATTGGCACTGCTGAGAATGTTAGAGTTGTACCTACCTTCAAGATCTACAAAAATGGCAGTCGTGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACACTCCATTAGGCATTACAGCTTGTAG 2040 0.498 MSHSGKPVSELGLSERLRDSLSCSDDSNKPDFRELDLGSPVSTLRPRQQFHHHSAPTTSSNSSSSSGGSSGSVPGQSNPVSRRSHSGELSGSSETNSPTRVSKPGHRRSSSGQSLTQSQRSPSSSSSAAVSSPPPNVLPAGNICPSGRVLKPATVAAAASRSSRSDVLGYGTGNYGHGSIMRGTKGGGGDAASVKIGGGDSGKRVDPEEVKRMGNEEYKRGHFGEALCLYDRAIAMSPSNAAYRSNRAAALTGLGRLPEAVRACEEAVGLDPNYGRAHQRLAMLFLRLGLVEDARKHLYYPGLHPDLAELQKLQNVEKHINKCEDVRRVRDWNSVLREVDAAVAAGADSSVQLFMCRAEALLKLHQIDDAELCLSRIPKSEPHPGSLSQARFFGMFSEAYCYFVRAQIEMAFGRFENAVTAAEKANQIDPRNVEVAVLVKNVRIVARARLRGNDLFKSERFTEACSAYEEGLRLDPSNSVLYCNRAACWFKLGKWERSIDDCDQALRIQPNYTKAILRRAASNSKLERWEEAIKDYELLRRELPDDSDVSESLFHAQVALKKSRGEDVQNLKFGGEVEEISGLEQFRAAISLPGVSVVLFETASNLQCKQISPFVVTLCSRYPSINFLKVDILASPAIGTAENVRVVPTFKIYKNGSRVKEIICPSHDMLEHSIRHYSL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00549 679 Pfam Tetratricopeptide repeat 481 512 IPR001440 GO:0005515
Spst11g00549 679 MobiDBLite consensus disorder prediction 1 143 - -
Spst11g00549 679 Coils Coil 519 539 - -
Spst11g00549 679 Pfam Tetratricopeptide repeat 213 273 - -
Spst11g00549 679 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Spst11g00549 679 MobiDBLite consensus disorder prediction 42 133 - -
Spst11g00549 679 Pfam Thioredoxin 597 671 IPR013766 -
Spst11g00549 679 ProSiteProfiles TPR repeat profile. 207 240 IPR019734 GO:0005515
Spst11g00549 679 FunFam TPR repeat-containing thioredoxin TTL4 571 678 - -
Spst11g00549 679 CDD TRX_family 584 665 - -
Spst11g00549 679 SUPERFAMILY TPR-like 449 562 IPR011990 GO:0005515
Spst11g00549 679 ProSiteProfiles TPR repeat profile. 399 432 IPR019734 GO:0005515
Spst11g00549 679 SUPERFAMILY Thioredoxin-like 575 674 IPR036249 -
Spst11g00549 679 SUPERFAMILY TPR-like 207 435 IPR011990 GO:0005515
Spst11g00549 679 MobiDBLite consensus disorder prediction 19 33 - -
Spst11g00549 679 Pfam Tetratricopeptide repeat 401 432 IPR019734 GO:0005515
Spst11g00549 679 Gene3D Glutaredoxin 570 678 - -
Spst11g00549 679 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 676 IPR044534 -
Spst11g00549 679 SMART tpr_5 207 240 IPR019734 GO:0005515
Spst11g00549 679 SMART tpr_5 513 546 IPR019734 GO:0005515
Spst11g00549 679 SMART tpr_5 399 432 IPR019734 GO:0005515
Spst11g00549 679 SMART tpr_5 445 478 IPR019734 GO:0005515
Spst11g00549 679 SMART tpr_5 351 384 IPR019734 GO:0005515
Spst11g00549 679 SMART tpr_5 241 274 IPR019734 GO:0005515
Spst11g00549 679 SMART tpr_5 479 512 IPR019734 GO:0005515
Spst11g00549 679 Gene3D Tetratricopeptide repeat domain 205 565 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00549 Spst-Chr11 27479075 27482284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00549 444 589 U-box Gene Family AT3G07370 26.776 1.45e-08 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00549 11 27479075 27482284 Spst11g00549 11 27479075 27482284 ECH
Spst5g01310 5 26866282 26869240 Spst11g00549 11 27479075 27482284 PCT
Spst11g00549 11 27479075 27482284 Spst5g00933 5 8721707 8724470 PCT