Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02367 ATGGTATTGTCTTGGACCAGAAAGAATGTTTTCCGCCGTGCCCGCAAGGGGAAGGAACAAGTTTCCGGTGGTGATTTGGAGGTGGAGATTGTGATCCCCACTCATTTCCGGTGCCCTGTGAGTTTGGATTTGATGAAAGACCCAGTGACTCTTCAAACTGGCATCACCTACGACAGGGGAAGCATTGAGAAGTGGGTTGAAGCAGGGAACAAAACTTGCCCTGTTACCAATCAAGTTCTCACAAGCTTTGACATGATCCCCAACCATGCCATTCGTAGGATGATTCAGGATTGGTGTGTTGAGAACAGTTCTTATGGGATTGAAAGGATCCCAACTCCTCGGATACCCGTTTCTGGCTACGAGGTTTCTGAGATTTGTTCTAAGATGTTGTCTGCTTCTCAGCGTGGGGATGACAACAAGTGCCAGGAATTGGTGGGAAAGATCAAGGCTTTAGGGAGAGAGAGTGAGAGGAACAAGAGGTGCATAGTAGGGAATGGAGCAGGTTCTGTCTTTGCCACTGCCTTTGATTCTTTTTCAAGGGACTCTATTCACAACCATGTGGTTATTTTGGAGGAGATCTTGGAAGTTTTGACATGGATGATCCCACTTAGTGAAGAGGGTCAATCCAAATTGGGTTCAGCACCTTCTTTGCATTGCATGGTTTGGTTTCTAGAAAGTAAAGACCTTGCAGCAAGGCAAAATGCTGCTTTGTTGCTCAAGGAAGTGGGTGTTGAGGAATTGGCCAAAATTGAAGGGATTGTTGAAGGTTTGATGAAGATTGTTAGGGAGCCTATTGGTTCTACTGCTGCTACCAAGGCATGTTTGGTAACAATTTTCAAATTGGTTTCCTCAGCTGATAATAGAGAGGCAATTGCTAAGAGATTTGTGGAATTGGGTTTGGTTTCACTCCTGCTAGAAACAATTGTTGAAGCTGAGAAAGGGACATGTGAGAAGGCACTTGGGGTGTTGGACTGCATTTGTGACTGCAAAGAAGGGAAGGAGGTTGCCAAAATGAATGCTTTAACCTTGCCTCTTGTGGTTAAGAAGATATTGAGAGTGTCCCAATTGGCTTCCAATTTTGCAGTGTCTGTTCTTAGAAAGATATGCGACAAGAGGGAAGAAGAAATCTTGATTGAGGCACTTCAAGTGGGGGCTTTTCAGAAACTCTTGGTTATGTTGCAAGTTGGTTGTGATGAGAGCACAAAGGAGAATGCTACTGAGCTGTTGAAACTGTTGAATGGTTACAAGAGCAGAGCAGAGTGTGTTGACTCCTCATTGGATCTCAAGTATCTTAAGAAGCCCTTCTGA 1308 0.4457 MVLSWTRKNVFRRARKGKEQVSGGDLEVEIVIPTHFRCPVSLDLMKDPVTLQTGITYDRGSIEKWVEAGNKTCPVTNQVLTSFDMIPNHAIRRMIQDWCVENSSYGIERIPTPRIPVSGYEVSEICSKMLSASQRGDDNKCQELVGKIKALGRESERNKRCIVGNGAGSVFATAFDSFSRDSIHNHVVILEEILEVLTWMIPLSEEGQSKLGSAPSLHCMVWFLESKDLAARQNAALLLKEVGVEELAKIEGIVEGLMKIVREPIGSTAATKACLVTIFKLVSSADNREAIAKRFVELGLVSLLLETIVEAEKGTCEKALGVLDCICDCKEGKEVAKMNALTLPLVVKKILRVSQLASNFAVSVLRKICDKREEEILIEALQVGAFQKLLVMLQVGCDESTKENATELLKLLNGYKSRAECVDSSLDLKYLKKPF. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02367 435 SUPERFAMILY RING/U-box 27 108 - -
Seca6g02367 435 Gene3D - 123 423 IPR011989 -
Seca6g02367 435 FunFam RING-type E3 ubiquitin transferase 26 108 - -
Seca6g02367 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 105 IPR013083 -
Seca6g02367 435 PANTHER WDSAM1 PROTEIN 29 422 IPR045185 GO:0061630
Seca6g02367 435 CDD RING-Ubox_PUB 33 85 IPR045210 -
Seca6g02367 435 SUPERFAMILY ARM repeat 129 412 IPR016024 -
Seca6g02367 435 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Seca6g02367 435 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Seca6g02367 435 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02367 Seca-Chr6 85760595 85761902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02367 27 435 U-box Gene Family AT5G37490 49.760 1.06e-133 390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02367 6 85760595 85761902 Seca6g02367 6 85760595 85761902 ECH