Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08209 ATGAGGGAGGAAGAGATCGAGAAGCTTCGAGGAGTGGTGAGGGACTGCGTAAGCAAGCACCTTTACTCATCGGCTATCTTCTTCGCTGACAAAGTTGCGGCCTTCACCAATGACCCCGCCGACATCTACATGCAAGCCCAAGCCCTCTTCCTTGGCCGCCACTACCGCCGCGCCTTCCACCTCCTCAACGCCTCCAAGATCGTCCTGCGCGACCTCCGCTTCCGCTACCTCGCCGCCAAGTGCCTCGAGGAATTGAAGGAGTGGGATCAATGCCTATCAATGCTGGGTGAGGCTAAAGTGGATGATAATGGAAATGTTTCTGACACAAAGGACTCTAATGTCATGTACTTGGACAAAGATGGCGAAGATCGTGAAATCAATATATCTTCTGCAATATGCTTCTTAAGAGGCAAAGCATATGAAGCTCTAGAAAACCGCGCTCAGGCTCGATTGTGGTACAAAGCTGCTATAAAAGCGGATCCTTTATGCTATGAGGCTTTGGAATGTCTTATTCAAAATCACATGCTTACATGTGATGAAGAAGCAAATTTGATCTCATCATTGCAATTTGGTAGTGAGGATGGATGGCTGTCATCATTTTATTCTTGTTTAATAAAGAAGTATGACAAAGAAAATGGTGTAGAAGCCAAGTTCAGAGATCTTGAGAATGAAAGCTGTAAAAGTGACCAGTCTGATCCTTCTTTCTTGCGCACACTGAAAACCAACACTGATCTATTGGCCTGCAAAGCTGAATACTACCATCAGTGTGGTGAATATCAGAAATGTTTTGAGTTAACATATGTTTTGCTTGAGAAGGATCCTTTCCATCTCAAGAGTACATTGGTACATCTGGCAGCTGCTATGGAACTTGGGCATTCAAATGAACTCTATTTGATGGCATGCCATTTGGTGAAGGATTATCCTCAAAAATCTTTATCGTGGTTTGCTGTTGGTTGCTATTACTATTGTATCAAGAAGTATGACCAATCTCGCCGTTATTTCAGCAAGGCAACTAGTCTAGATGGAACATTTGCCCCTGCATGGATAGGCTATGGGAATGCCTATGCTGCTCAAGAAGAGGGTGATCAGGCTATGTCAGCTTACCGCACTGCAGCTCGATTATTTCCTGGGTGCCATTTACCAACTCTTTATATTGGAATGGAATGCATGCGGACCCACAGCTATAAGCTTGCTGAGCAGTTTTTTATGCAGGCTAAGTCAACTTGCCCCTCAGATCCACTTGTATACAATGAACTTGGAGTTGTTGCCTATCATATGAAAGAATATAAAAAAGCAGTATGGTGGTTCGAGAAAACATTAGCCCTCATACCAACCACTTTAAGTGAGATGTGGGAGCCGACTGTAGTCAATCTTGCCCATGCATACAGAAAGTTGAAGATGTACCGAGAAGCAATTTCATATTATGAGAAAGCACTTGCATTATCAACAAGAAGTGTGAGCACATATGCCGGTCTTGCATATACTTACCACTTACAGGATGATTTCACTACCGCAATTACGTATTACCATAAAGCGTTGTGGCTGAAACCGGACGATCAGTTCTGCACTGAAATGTTAAGCTGGGCTCTGATAGATGAAAGTCGAAGGGGCGTTGACCCCATCTTGAATTCCGGTGAGGTCTGA 1644 0.441 MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTNDPADIYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWDQCLSMLGEAKVDDNGNVSDTKDSNVMYLDKDGEDREINISSAICFLRGKAYEALENRAQARLWYKAAIKADPLCYEALECLIQNHMLTCDEEANLISSLQFGSEDGWLSSFYSCLIKKYDKENGVEAKFRDLENESCKSDQSDPSFLRTLKTNTDLLACKAEYYHQCGEYQKCFELTYVLLEKDPFHLKSTLVHLAAAMELGHSNELYLMACHLVKDYPQKSLSWFAVGCYYYCIKKYDQSRRYFSKATSLDGTFAPAWIGYGNAYAAQEEGDQAMSAYRTAARLFPGCHLPTLYIGMECMRTHSYKLAEQFFMQAKSTCPSDPLVYNELGVVAYHMKEYKKAVWWFEKTLALIPTTLSEMWEPTVVNLAHAYRKLKMYREAISYYEKALALSTRSVSTYAGLAYTYHLQDDFTTAITYYHKALWLKPDDQFCTEMLSWALIDESRRGVDPILNSGEV. 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08209 547 Pfam Tetratricopeptide repeat 132 161 IPR019734 GO:0005515
Seca4g08209 547 Pfam Anaphase-promoting complex, cyclosome, subunit 3 19 97 - -
Seca4g08209 547 SUPERFAMILY TPR-like 37 174 IPR011990 GO:0005515
Seca4g08209 547 PANTHER CELL DIVISION CYCLE 16,23,27 22 523 - -
Seca4g08209 547 Gene3D Tetratricopeptide repeat domain 5 532 IPR011990 GO:0005515
Seca4g08209 547 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Seca4g08209 547 Pfam Tetratricopeptide repeat 457 481 IPR001440 GO:0005515
Seca4g08209 547 ProSiteProfiles TPR repeat profile. 345 378 IPR019734 GO:0005515
Seca4g08209 547 Pfam Tetratricopeptide repeat 488 519 IPR019734 GO:0005515
Seca4g08209 547 SUPERFAMILY HCP-like 313 520 - -
Seca4g08209 547 Pfam Tetratricopeptide repeat 319 377 - -
Seca4g08209 547 ProSiteProfiles TPR repeat profile. 413 446 IPR019734 GO:0005515
Seca4g08209 547 ProSiteProfiles TPR repeat profile. 311 344 IPR019734 GO:0005515
Seca4g08209 547 SUPERFAMILY TPR-like 241 348 IPR011990 GO:0005515
Seca4g08209 547 SMART tpr_5 243 276 IPR019734 GO:0005515
Seca4g08209 547 SMART tpr_5 311 344 IPR019734 GO:0005515
Seca4g08209 547 SMART tpr_5 379 412 IPR019734 GO:0005515
Seca4g08209 547 SMART tpr_5 452 485 IPR019734 GO:0005515
Seca4g08209 547 SMART tpr_5 130 163 IPR019734 GO:0005515
Seca4g08209 547 SMART tpr_5 413 446 IPR019734 GO:0005515
Seca4g08209 547 SMART tpr_5 345 378 IPR019734 GO:0005515
Seca4g08209 547 SMART tpr_5 486 519 IPR019734 GO:0005515
Seca4g08209 547 ProSiteProfiles TPR repeat profile. 452 485 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08209 Seca-Chr4 194709233 194721629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08209 290 518 Glycosyltransferase AT3G04240 23.144 2.59e-11 64.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08209 4 194709233 194721629 Seca4g08209 4 194709233 194721629 ECH