Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08191 ATGCGATATTTCAATGTTATGATCCTAGGGCCGACCCAGTCACCTTATGAAGGAGGAGTTTTTAAGTTAGAACTATTTTTGCCGGAAGAATATCCAATGGCTGCTCCAAAGGTTAGATTTCTGACAAAAATATATCATCCAAACATTGATAAGCTTGGCAGGATATGTCTTGATATTCTGAAAGACAAGTGGAGTCCTGCCCTTCAGATACGCACTGTTCTTTTGAGCATTCAAGCTCTGTTGAGTGCACCAAACCCAGATGATCCACTTTCCGAGAACATTGCCAAGCATTGGAAATCTAATGAGGCTGAGGCTGTGGAAACAGCAAAGGAATGGACCCGATTATATGCTAGTGGCGCCTGA 363 0.427 MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASGA. 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08191 120 SUPERFAMILY UBC-like 1 118 IPR016135 -
Seca4g08191 120 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 118 IPR000608 -
Seca4g08191 120 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 105 - -
Seca4g08191 120 CDD UBCc 4 113 IPR000608 -
Seca4g08191 120 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 45 60 IPR023313 -
Seca4g08191 120 Gene3D Ubiquitin Conjugating Enzyme 1 120 IPR016135 -
Seca4g08191 120 SMART ubc_7 1 118 - -
Seca4g08191 120 FunFam Ubiquitin-conjugating enzyme E2 36 1 119 - -
Seca4g08191 120 Pfam Ubiquitin-conjugating enzyme 2 112 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08191 Seca-Chr4 194326799 194332578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08191 8 85 Miscellaneous Gene Families AT3G17000 32.143 2.83e-07 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08191 4 194326799 194332578 Seca4g08191 4 194326799 194332578 ECH