Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08190 ATGTCACATTCCGGGAAACCCGTTTCCGAGTTAGGGCTCAGCGAACGCTTCCGCGACTCACTGAGTTGCTGCGAAGACAAAAACAAGCCCGATTTCCGAGAACTCGATCTGGGTTCCCCCATTTCGCCGTTACGAACTCAACACCATCAGAGTGCAGCCACCACCAGCAGTAGTAGCAGCAGCGGGTCTTCCGGGTCGGTTACGGGTCGAAATGGAAACGACCCGGTTACGAGGAGATCCGATTCCGGCGAACTCTCCGACAACAACAGTCCGACCCAGAGCCTCAAACCGGTTCACAGGAGATCCGTTTCGAGTACCTCGTTGCCTTTAATCTATTCAGGCCAAACCCAGAAATCCCCCTCGTCGACCTCCTCCTCCGCAGCCGTGAATTCTCCGCCGATTAACGTTCTTCCAGCCGGAAACATATGCCCCTCCGGCAGGGTTCTTAAGACTGGCATGGTGCCGAACCGGAGCTCCAGGACCGACGTTTTGGGCTCTGGCACGGTGAATTACGGCCATGGAAGCATAATGCGGGGCGGAAAAGGTGGCGGTGGCAACACTAGTGAGGCGGCGAGGTTGAGCAGCGGTGGCGGTGGTGATTCCACTAAGAGAGTGGATCCGGAAGAGGTGAAGAGAGCAGGGAATGAAGAGTACAAAAGGGGGCACTTTGCTGAGGCGTTGTGCCTGTATGATCGGGCAATTGCATTGTCTCCGGGCAACGCCGCTTACCGGAGTAACCGGGCAGCGGCGTTGACCGGTTTGGGACAGTTGACGGAGGCTGTGACTGCTTGTGAGGAAGCTGTGCGGTTGGATCCTAATTATGGAAGGGCACATCAGCGTTTGGCAGCTCTTTTTCTCAGGTTAGGACAAATTGAGAATGCTAGGAAGCATCTCTGTTATCCTGGGCTGCTGCCAGATCCTTCCCAGTTGCAGAAGTTGCAAATGGTGGAAAAGCACATGAGCAAATGTGTGGACTTAAGGAGAATAAGAGATTGGAAAAGTGTTCTGAAGGAAGTTGATGCTGCTATTGCTGCTGGAGTGGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCAGAAGCACTTCTGAAGCTTCTCCAAATTGATGATGCTGAATCGAGTTTACTACGGATTCCCAAATGTGAACCACATCCTACTTCCTCATCACAGGCAAGGTTTTTTGGAATGCTTTCTGAAGCTTATTGCTACTTTGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATTGATCCCCGGAACATTGAAGTTGCTGTTTTGCTCAGCAATGTAAGGATGGTGGCAAGAGCTCGATTGCGTGGCAATGATCTTTTTAAATCAGAAAGGTTCACTGAGGCATGCTCAGCATATGGGGAAGGTTTGAGGCTGGACCCTTTAAATTCTGTTCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTCCAATCAAGCCTTACAAATCCGACCAAATTACACTAAAGCTATTCTTCGAAGGGCAGCCTCAAATAGCAAGCTAGAAAGGTGGGTAGAAGCAGTTAAGGATTATGAGCTCTTGCAGAGAGAACTACCAAATGACAATGAAATTGCTGAAGCTCTATTTCATGCACAAGTTTCATTAAAGAAATCTCGTGGGGAAGAAGTACAAAATTTAAAATTTGGAGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTCAGAGCTGCAATATCTGTGCCAGGTGTTTCTGTTGTCCATTTTCAAACCGCATCTAACCTACAATGCAAGCAAATATCACCATTTGTGGATACACTATGTGGTCGCTATCCATCTATTAACTTCCTTAAGGTGGATATTCAAGAAAGCCCATCAGTTTCTACTGCTGAGAATGTTAGGATTGTACCAACCTTCAAGATCTACAAAAACGGCAGCCGAGTGAAGGAAATTGTATGCCCTACTCGTGATGTGTTGGAACACTCCGTTAGGCATTACAGCTTGTAA 2040 0.4819 MSHSGKPVSELGLSERFRDSLSCCEDKNKPDFRELDLGSPISPLRTQHHQSAATTSSSSSSGSSGSVTGRNGNDPVTRRSDSGELSDNNSPTQSLKPVHRRSVSSTSLPLIYSGQTQKSPSSTSSSAAVNSPPINVLPAGNICPSGRVLKTGMVPNRSSRTDVLGSGTVNYGHGSIMRGGKGGGGNTSEAARLSSGGGGDSTKRVDPEEVKRAGNEEYKRGHFAEALCLYDRAIALSPGNAAYRSNRAAALTGLGQLTEAVTACEEAVRLDPNYGRAHQRLAALFLRLGQIENARKHLCYPGLLPDPSQLQKLQMVEKHMSKCVDLRRIRDWKSVLKEVDAAIAAGVDSCVQLFMCRAEALLKLLQIDDAESSLLRIPKCEPHPTSSSQARFFGMLSEAYCYFVRAQIEMAFGRFENAVTAAEKASQIDPRNIEVAVLLSNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPLNSVLYCNRAACWFKLGQWERSIEDSNQALQIRPNYTKAILRRAASNSKLERWVEAVKDYELLQRELPNDNEIAEALFHAQVSLKKSRGEEVQNLKFGGEVEDISGLEQFRAAISVPGVSVVHFQTASNLQCKQISPFVDTLCGRYPSINFLKVDIQESPSVSTAENVRIVPTFKIYKNGSRVKEIVCPTRDVLEHSVRHYSL. 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08190 679 Gene3D Tetratricopeptide repeat domain 205 565 IPR011990 GO:0005515
Seca4g08190 679 MobiDBLite consensus disorder prediction 1 209 - -
Seca4g08190 679 MobiDBLite consensus disorder prediction 19 34 - -
Seca4g08190 679 MobiDBLite consensus disorder prediction 43 132 - -
Seca4g08190 679 SUPERFAMILY TPR-like 351 537 IPR011990 GO:0005515
Seca4g08190 679 CDD TRX_family 584 665 - -
Seca4g08190 679 ProSiteProfiles TPR repeat profile. 207 240 IPR019734 GO:0005515
Seca4g08190 679 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Seca4g08190 679 FunFam TPR repeat-containing thioredoxin TTL4 571 678 - -
Seca4g08190 679 SUPERFAMILY Thioredoxin-like 482 677 IPR036249 -
Seca4g08190 679 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 676 IPR044534 -
Seca4g08190 679 SMART tpr_5 351 384 IPR019734 GO:0005515
Seca4g08190 679 SMART tpr_5 241 274 IPR019734 GO:0005515
Seca4g08190 679 SMART tpr_5 479 512 IPR019734 GO:0005515
Seca4g08190 679 SMART tpr_5 207 240 IPR019734 GO:0005515
Seca4g08190 679 SMART tpr_5 445 478 IPR019734 GO:0005515
Seca4g08190 679 SMART tpr_5 399 432 IPR019734 GO:0005515
Seca4g08190 679 SMART tpr_5 513 546 IPR019734 GO:0005515
Seca4g08190 679 ProSiteProfiles TPR repeat profile. 399 432 IPR019734 GO:0005515
Seca4g08190 679 Pfam Tetratricopeptide repeat 401 432 IPR019734 GO:0005515
Seca4g08190 679 Pfam Tetratricopeptide repeat 213 273 - -
Seca4g08190 679 MobiDBLite consensus disorder prediction 152 168 - -
Seca4g08190 679 SUPERFAMILY TPR-like 208 298 IPR011990 GO:0005515
Seca4g08190 679 Gene3D Glutaredoxin 571 678 - -
Seca4g08190 679 Pfam Thioredoxin 585 670 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08190 Seca-Chr4 194311141 194314335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08190 444 589 U-box Gene Family AT3G07370 28.415 1.50e-08 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08190 4 194311141 194314335 Seca4g08190 4 194311141 194314335 ECH
Seca4g08190 4 194311141 194314335 Seca4g05749 4 109697312 109700761 PCT