Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08173 ATGGCCATGGATCCCACAAAGAAGCGCAAGCTTGACGAGAACGGCTTTGGCGGCGGCGGCGATTCTGATCACCTAAAGCTCTCCCCGGTGGACGCCCGTAAGATCATCGAGCGGTTCACCCCCGACCAGCTCCTTGACATCCTCCAGGACGCCGTCGTTCGCCACGCCGACGTGCTCGCAGCCGTCCGCGCCGTCGCCGACCCTGATGTCTCCCAGCGCAAGCTCTTCATCCGTGGTCTCGGTTGGGACACCACCACCGATGGCCTCCGGTCCCTCTTTTCCACCTACGGGGACCTCGAAGAGGCCGTCGTGATCCTCGACAAGGCCACTGGAAAGTCTAAGGGCTACGGCTTCGTCACCTTCCGCCACGTCGATGGTGCCCTCCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGGCGCGTCACCGTCACACAACTCGCCGCCGCCGGCAATTCTGGCTCTAATACCAATGCAGCCGACATAGCGCTCCGCAAGATTTACGTTGCTAACGTTCCTCCGGATCTCCCAGCGGACAAGCTCCTCGCCCACTTCTCCATCTACGGTGAGATCGAAGAAGGTCCATTGGGCTTCGACAAGCAGACAGGAAAGTCTAAGGGATTCGCGCTCTTCGTGTATAAGACCCCCGAGGGGGCTCAAGCGGCACTCTCAGATCCCGTGAAGACCGTGGAGGGAAGACAGCTGAATTGCAAGCTGGCAATAACTGACAATAAGCAAGGTAAGCGTGGTGGGCCCGGTCCGGTTGGACCGGATGGGGTTCAGGGCCATGGGAATGCTCATGGACATCATGGTGATGGGATGGGGATGCCTCCGGCAGCGGGTTCTGGTCCCGGGTCGCTTTCGGGTCAGTATGGCGGCCCGGTTGGTTTGGGTTCTTATGGTGGGTTTGGAGGTGGGCTTCAGGGTCAGCCTCCGCTGGGTAATCATCCCATGAATTCATCGGTTGGTGGGTTGTCTTCGGTGGGGAATCAGGGGCCATCGGCGATGGGCGGTGCTGGCGGGTACGGTGCTGGGCTGGGTGGTCATTATGGGGGATATGGTGGGCCTGGGTCGACGGGATTTGGTGGATTGGGCGGTGCTGGTGGTGCTGGTGGTGCGGGTGCGGGTGCCGCTGGTGGACTTGGTGGTTCCGGTGGTGGTTTGGGTGGCGCAGGTTCCTTGTATAGATTGCCGAGTTCAGGTGGAATGCAAGCTGGTGGGTATCCAGACAGTGGGCACTATAGTTTATCAGCTTCATCTGGGTACCAGAATCAACATCATCCTCCTGCTGGGGCGTCACCTGTACCTAGGGTTCCCCCGGGTTCAATGTATCCAAATGTGCCCCCTTACTACTGA 1356 0.6018 MAMDPTKKRKLDENGFGGGGDSDHLKLSPVDARKIIERFTPDQLLDILQDAVVRHADVLAAVRAVADPDVSQRKLFIRGLGWDTTTDGLRSLFSTYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNAADIALRKIYVANVPPDLPADKLLAHFSIYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALSDPVKTVEGRQLNCKLAITDNKQGKRGGPGPVGPDGVQGHGNAHGHHGDGMGMPPAAGSGPGSLSGQYGGPVGLGSYGGFGGGLQGQPPLGNHPMNSSVGGLSSVGNQGPSAMGGAGGYGAGLGGHYGGYGGPGSTGFGGLGGAGGAGGAGAGAAGGLGGSGGGLGGAGSLYRLPSSGGMQAGGYPDSGHYSLSASSGYQNQHHPPAGASPVPRVPPGSMYPNVPPYY. 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08173 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 246 IPR000504 GO:0003723
Seca4g08173 451 MobiDBLite consensus disorder prediction 406 451 - -
Seca4g08173 451 SUPERFAMILY RNA-binding domain, RBD 158 271 IPR035979 GO:0003676
Seca4g08173 451 SMART rrm1_1 74 146 IPR000504 GO:0003723
Seca4g08173 451 SMART rrm1_1 166 238 IPR000504 GO:0003723
Seca4g08173 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 234 IPR000504 GO:0003723
Seca4g08173 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 142 IPR000504 GO:0003723
Seca4g08173 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Seca4g08173 451 MobiDBLite consensus disorder prediction 432 451 - -
Seca4g08173 451 MobiDBLite consensus disorder prediction 1 19 - -
Seca4g08173 451 MobiDBLite consensus disorder prediction 241 329 - -
Seca4g08173 451 Gene3D - 154 276 IPR012677 -
Seca4g08173 451 MobiDBLite consensus disorder prediction 413 427 - -
Seca4g08173 451 FunFam UBP1-associated protein 2C isoform A 56 159 - -
Seca4g08173 451 MobiDBLite consensus disorder prediction 313 329 - -
Seca4g08173 451 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g08173 451 PANTHER GEO13361P1-RELATED 57 339 - -
Seca4g08173 451 SUPERFAMILY RNA-binding domain, RBD 66 150 IPR035979 GO:0003676
Seca4g08173 451 Gene3D - 60 153 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08173 Seca-Chr4 193896576 193900549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08173 161 240 C2H2 Transcription Factor Family AT2G19380 41.250 6.41e-11 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08173 4 193896576 193900549 Seca4g08173 4 193896576 193900549 ECH