Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05749 ATGTTGTTGGAGAAGCATTTGAATCGATGTGCAGATGCAAGAAAAATTGGTGATTGGAAGAGAGCACTTAGGGAATCAGAGGCAGCCATTGCGGTTGGAGCAGATTTCTCACCTCAGCTTGTTGCTTGTAAAGTGGAAGCTTATTCAAAACTCAATCAACTTGAGGATGCTGAATCCTATCTCTCAAACATTCCCAAGTTGGAAGGTTGTCCTCCAGCCTGTTCTCAAGCCAAGTTCTTTGGTATGGTTGGTGAAGCCTATGTGCATTATGTTTCTGCGCAGGTTGAGATGGCCTTGGGAAGGTTTGAGAATGCTGTCACAGCAGCAGAAAAGGCCAGCCTGTTAGATTTTAGTAATATTGAAGTTTCTAGGATTTTAAATGTTGTGAAAATGGTGGCGAGAGCTCGATCCAGGGGCAATGATCTTTTCAGCTCTGGAAAATTTTCTGAAGCTTGTTCTGCTTATGGAGAAGGCCTCAAATGTGACAATTCCAACTATATTCTATATTGCAATAGAGCTATTTGTTGGTCTAAACTTGGACTGTGGGAACAATCAGTTCAAGACTGCAACCAAGCACTTAAAATTCAACCAAATTACACCAAGGCCCTCTTCCGCAGGGCTGCATCAAATACAAAGCTTGAAAGATGGGCAGAAGTTGTTAAAGATTACCAGGCCTTAAAACGTGAACTACCTAATGACAATGAAGTTGCTGAGTCTCTTCGTCAGGCTCAACTAGCGTTGGAAACTTCTCGTGGATATGGTACTAAGTTTGGAGTTGAAGTTGAAGAAATCTCTTCATTAGATAAATTTAAAACTGCTATTGCTTCTTCTGGTGTTTCGCTTGTTCATTTCAAAGAGGCATCAAATGAACTATGTGAAGAACTATCTCCATTCATAAATACATTATGTGTTAGATATCCCTCTGTTAAATTTATTAAGGTGGACGTGGAGGAGTGTCTGGCAATAGCAAAAGCTGAAAGCATAAGAAGTGTTCCCACTTTTAAAATTTATAAAAATGGACAGAAGGTGAAGGAGATGATCCGCCCAACCCATCAGTCCTTAGAGGACTCAGTAAGGAAAAGTAGTGGTCTCTAG 1095 0.4073 MLLEKHLNRCADARKIGDWKRALRESEAAIAVGADFSPQLVACKVEAYSKLNQLEDAESYLSNIPKLEGCPPACSQAKFFGMVGEAYVHYVSAQVEMALGRFENAVTAAEKASLLDFSNIEVSRILNVVKMVARARSRGNDLFSSGKFSEACSAYGEGLKCDNSNYILYCNRAICWSKLGLWEQSVQDCNQALKIQPNYTKALFRRAASNTKLERWAEVVKDYQALKRELPNDNEVAESLRQAQLALETSRGYGTKFGVEVEEISSLDKFKTAIASSGVSLVHFKEASNELCEELSPFINTLCVRYPSVKFIKVDVEECLAIAKAESIRSVPTFKIYKNGQKVKEMIRPTHQSLEDSVRKSSGL. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05749 364 SMART tpr_5 200 233 IPR019734 GO:0005515
Seca4g05749 364 SMART tpr_5 166 199 IPR019734 GO:0005515
Seca4g05749 364 SMART tpr_5 132 165 IPR019734 GO:0005515
Seca4g05749 364 SMART tpr_5 86 119 IPR019734 GO:0005515
Seca4g05749 364 FunFam TPR repeat-containing thioredoxin TTL4 255 362 - -
Seca4g05749 364 Pfam Thioredoxin 268 358 IPR013766 -
Seca4g05749 364 CDD TRX_family 270 349 - -
Seca4g05749 364 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 3 359 IPR044534 -
Seca4g05749 364 Pfam Tetratricopeptide repeat 168 199 IPR001440 GO:0005515
Seca4g05749 364 Gene3D Glutaredoxin 251 363 - -
Seca4g05749 364 SUPERFAMILY Thioredoxin-like 174 360 IPR036249 -
Seca4g05749 364 SUPERFAMILY HCP-like 12 222 - -
Seca4g05749 364 Gene3D Tetratricopeptide repeat domain 2 250 IPR011990 GO:0005515
Seca4g05749 364 Pfam Tetratricopeptide repeat 88 117 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05749 Seca-Chr4 109697312 109700761 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05749 4 109697312 109700761 Seca4g05749 4 109697312 109700761 ECH
Seca4g08190 4 194311141 194314335 Seca4g05749 4 109697312 109700761 PCT