Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04784 ATGGCAACTAGGAAAGTTGAGAAGATGGCTTCAATTGATGCTCAGTTGAGGTTGCTGGCACCAAGTAAGGTGTCTGATGATGACAAGCTTGTTGAATATGATGCTTTGTTGCTGGACCGTTTCCTTGACATTCTTCAGGATTTGCATGGAGACGATATCAGAGAAACGGTTCAAGACTGTTATGAACTGTCCGCTGAGTATGAAGGGGAGAATAACCCTCAAAAGTTGGAGGAACTTGGGAACATGCTGACTGGTCTTGATGCTGGGGATTCTATTGTCATTGCCAAGTCATTTTCTCACATGCTTAATTTGGCCAACTTGGCAGAAGAAGTTCAAATTGCTTATCGAAGAAGGATTAAGTTATTAAAGAAGGGTGATTTTGCTGATGAGAATTCTGCCATCACTGAATCAGACATTGAAGAGACCTTCAAGAGGCTTGTGAATCAACTGAAGAAGACCCCCCACGAAATCTTTGATGCTCTGAAGAACCAAACTGTAGATTTGGTCCTAACTGCTCACCCTACTCAGTCTGTTCGTAGATCTTTGCTGCAAAAGCATGGCAGGATAAGGAATTGCTTGACTCAGTTGTATGCAAAAGATATAACACCAGATGATAAGCAGGAACTTGATGAGGCTTTACAAAGAGAGATTCAAGCTGCATTTCGTACAGATGAAATTCGAAGGACCCCTCCTACACCACAAGATGAGATGAGGGCAGGAATGAGCTACTTTCATGAGACAATCTGGAAAGGTGTACCCAATTTTTTGCGCCGGGTTGATACAGCCCTAAAGAACATAGGAATAAATGAACGTGTTCCATATAATGCCCCTGTTATTCAATTCTCTTCTTGGATGGGAGGAGATCGTGATGGTAACCCCAGAGTAACTCCTGAAGTTACAAGGGACGTGTGTTTGCTGGCTAGAATGATGGCTGCTAATTTGTACTTCTCTCAGATTGAGGATCTCATGTTTGAGATGTCTATGTGGCGTTGCAATGATGAGCTACGTGTTCGTGCTGATGAACTCCTTAGTTCCTCAAAGAGAGATTCAAAACATTATATTGAGTTCTGGAAACAGATACCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTGAGGGACAAACTATACAGTACACGTGAACGTGCCCGGCAGTTATTAGCCAATGGGAGCTCTGAAATCCCTGAAGAAACTACCTTCACAAATGTTGAACAGTTCCTGGAGCCTCTTGAACTATGTTATAGGTCACTGTGTGCATGTGGTGATCAACCAATTGCTGATGGAAGCCTTCTTGATTTCTTGCGGCAAGTTTCCACATTTGGGCTTTCACTTGTGAGACTTGATATCCGTCAAGAATCAGACAGGCACACTGATGTTATGGATGCTATTACAAACCACTTGGAGATTGGATCTTATCGAGAATGGTCTGAGGAGCGCAGACAGGAATGGCTGTTGTCTGAGCTCAGTGGAAAGCGCCCTCTCTTTGGCCCTGATCTTCCTAAAACGGAAGAAATTGCTGATGTTTTGGAAACCTTCCATGTCATTGCTGAACTTCCTTCTGACAACTTTGGTGCCTATATCATTTCAATGGCAACAGCCCCATCTGATGTGCTTGCTGTAGAACTTTTACAACGTGAATGTCATGTGACGCAGCCATTAAGGGTTGTCCCATTGTTTGAAAAACTTGCTGATCTTGAAGCTGCTCCTGCTGCTGTAGCCCGCCTATTTTCCATAGATTGGTACAGAAACCGCATCAATGGGAAACAAGAAGTTATGATAGGATACTCAGACTCAGGAAAAGATGCTGGTCGTCTCTCTGCAGCTTGGGCACTGTATAAGGCTCAAGAAGAGCTCATAAAGGTTGCAAAGGAGTATGGTGTTAAGCTAACAATGTTCCATGGCAGAGGAGGGACTGTGGGAAGAGGAGGAGGTCCCACTCATCTTGCTATATTATCTCAGCCACCAGATACTATTCATGGCTCACTTCGAGTAACAGTTCAAGGTGAAGTTATTGAACAGTCATTTGGAGAGGAGCACTTGTGCTTCAGAACACTTCAGCGTTTCACTGCTGCCACACTTGAGCATGGAATGCACCCTCCTGAGTCACCAAAACCAGAATGGCGTGCCCTCATGGATGAGATGGCTGTCATCGCAACAAAGGAGTATCGCTCTGTTGTTTTCCAGGAACCCCGTTTTGTTGAATACTTCCGACGTGCGACTCCTGAGTTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCATCAAAACGAAAGCCAAGTGGAGGAATTGAATCACTCCGTGCTATCCCTTGGATCTTTGCTTGGACTCAGACAAGGTTTCACTTACCAGTATGGCTTGGCTTTGGGGCTGCATTCAAGCATGTAATTGAGAAGGATCCAAAGAATCTCCAAATGCTTCAAGACATGTATAATCAATGGCCTTTTTTCAGGGTCACCATTGATTTGGTTGAGATGGTCTTCGCCAAGGGAGACCCTGGGATCGCCACCCTTTATGACAAACTCCTAGTGTCAGAGGAACTGTGGCCATTTGGTGAGAGATTAAGGTCTAAGTATGAAGAAACCAAGAGCCTTCTCCTCCAGGTTGCTGGGCACAAAGATCTCCTTGAAGGAGACCCCTACTTAAAGCAAAGACTTCGTCTTCGTGATTCATACATCACAACCCTCAATGTGTTGCAAGCCTACACATTGAAGCGAATCCGTGATCCTGATTACCATGTGAAGTTGAGGCCACATTTGTCCAAGGACTACATAGAATCAAGCAAGCCAGCAGCAGAGCTTGTAAAACTCAACCCCACTAGTGACTATGCCCCAGGTTTGGAGGATACCCTTATTTTGACAATGAAGGGTATAGCTGCTGGCATGCAAAACACTGGTTAA 2901 0.445 MATRKVEKMASIDAQLRLLAPSKVSDDDKLVEYDALLLDRFLDILQDLHGDDIRETVQDCYELSAEYEGENNPQKLEELGNMLTGLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAITESDIEETFKRLVNQLKKTPHEIFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPNFLRRVDTALKNIGINERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYFSQIEDLMFEMSMWRCNDELRVRADELLSSSKRDSKHYIEFWKQIPPNEPYRVILGDVRDKLYSTRERARQLLANGSSEIPEETTFTNVEQFLEPLELCYRSLCACGDQPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITNHLEIGSYREWSEERRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPSDNFGAYIISMATAPSDVLAVELLQRECHVTQPLRVVPLFEKLADLEAAPAAVARLFSIDWYRNRINGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELIKVAKEYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPESPKPEWRALMDEMAVIATKEYRSVVFQEPRFVEYFRRATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIEKDPKNLQMLQDMYNQWPFFRVTIDLVEMVFAKGDPGIATLYDKLLVSEELWPFGERLRSKYEETKSLLLQVAGHKDLLEGDPYLKQRLRLRDSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDYIESSKPAAELVKLNPTSDYAPGLEDTLILTMKGIAAGMQNTG. 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04784 966 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 966 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g04784 966 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 966 IPR022805 GO:0006099|GO:0008964|GO:0015977
Seca4g04784 966 PRINTS Phosphoenolpyruvate carboxylase signature 168 181 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g04784 966 PRINTS Phosphoenolpyruvate carboxylase signature 281 296 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g04784 966 PRINTS Phosphoenolpyruvate carboxylase signature 221 237 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g04784 966 PRINTS Phosphoenolpyruvate carboxylase signature 441 461 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g04784 966 PRINTS Phosphoenolpyruvate carboxylase signature 590 610 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g04784 966 PRINTS Phosphoenolpyruvate carboxylase signature 764 790 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g04784 966 PRINTS Phosphoenolpyruvate carboxylase signature 632 661 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g04784 966 Pfam Phosphoenolpyruvate carboxylase 36 966 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g04784 966 Gene3D Phosphoenolpyruvate/pyruvate domain 309 444 - -
Seca4g04784 966 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 169 180 IPR018129 -
Seca4g04784 966 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 966 IPR015813 GO:0003824
Seca4g04784 966 FunFam Phosphoenolpyruvate carboxylase 1 309 444 - -
Seca4g04784 966 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 592 604 IPR033129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04784 Seca-Chr4 88988092 88995452 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04784 4 88988092 88995452 Seca4g04784 4 88988092 88995452 ECH
Seca4g08192 4 194361667 194368164 Seca4g04784 4 88988092 88995452 PCT