Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06912 ATGGCGATGGCGAAAGAGAAAGAGGAAGATGGAGAGGAGGTTCACAACAGTGGGAAGAGGCTGAAATGCATGAGGAATCAAGTTCAAGTTCAATTTCAAGCAGAGGATGATGCAGTAGAAGAGGACAGTGAGCTTCCACTCAAGCCAGGACTTTTCTTTTACCCTACCACCCCCACCTCCTTTGTTGTCTCAGATGCTCTTGAACCCGATTACCCCATCATCTATGTCAACAAGGTCTTTGAAATCTCCACTGGTTATCGTGCTGATGAGGCACTTGGTCGCAACTGGGATCCTCGAGCTCAGAGACGGCACCCATTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTGAACAGACTGAGGCTTGCACCAATTCATGATGATGATGGAACCGTGACACACATAATAGGTATCCAACTATTCTCTGAGGCAAATATAGACCTGAACCGCGTCTCATATCCAGTCTTCAGAGAGACTTGTAATCAAGATTATGATAAAAGTGGTAAATATTCTCCTAAGAGTGGACAATCATTGTACACTCAACAACACCAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTGGCTCACAACATTTTGTCACGGTTGACACCAAGGGATGTAGCATCTATTGGGTCTGTTTGCAGGAGAATCCGTCAATTAACAAAAAATGAGCATGTTAGAAAGATGGTATGTCAAAATGCATGGGGCAAAGAAGTGACAGGCACATTGGAGCTGATGACCAAGAAGTTAGGATGGGGTCGTCTGACTCGGGAACTTACTACTCTTGAGGCTGTTTGTTGGAGAAAACTGACAGTTGGAGGTGCAGTGGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAATCGACTTGTATTGTTTGGAGGTGAAGGAGTGGATATGCAACCTATGGATGACACTTTTGTTCTAAATCTTGATGCTAAAAATCCAGAATGGCGGAGGGTTAGCGTGAAATCATCCCCACCTGGAAGATGGGGCCACACACTCTCATGCTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTTCTTGATTTGGATGCTCAACAGCCAACATGGAGGGAAGTCTGTGGTGGAACTCCACCCCTTCCTAGATCTTGGCACAGCTCTTGCACAATTGAAGGCTCCAAATTGGTTGTCTCTGGTGGGTGCACAGATGCTGGGGTACTTCTTAGTGACACATATTTACTTGACCTCACAACAGATAATCCAACATGGAGAGAAATTCCAACTTCATGGGCTCCTCCTTCTCGGTTGGGGCACTCACTCTCAGTCTATGGAAGAACAAAGATTCTCATGTTTGGTGGACTTGCAAAGAGTGGACACTTGAGATTACGATCAGGTGAGGCTTATACAATTGATTTAGAAGATGAACAACCACAATGGAGGCAACTAGAATATAGTGCATTCACAGGATCAGCAAGTCAAAATGCTGTTGTTCCTCCTCCTAGACTAGATCATGTTGCAGTTAGCATGCCTTGTGGGAGGATCATTATATTTGGAGGTTCCATTGCAGGTCTTCACTCACCATCTCAGCTATTTCTCTTGGACCCTTCTGAAGATAAACCATCATGGAGGATCCTCAATGTTCCAGGGCAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGAGTGTTGGTATTGGGTGGACATACTGGGGAAGAATGGATACTGAATGAGTTGCATGAGTTATGCTTAGCAAGTCGACAAGACTGTGACATGTGA 1878 0.4499 MAMAKEKEEDGEEVHNSGKRLKCMRNQVQVQFQAEDDAVEEDSELPLKPGLFFYPTTPTSFVVSDALEPDYPIIYVNKVFEISTGYRADEALGRNWDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHIIGIQLFSEANIDLNRVSYPVFRETCNQDYDKSGKYSPKSGQSLYTQQHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQLEYSAFTGSASQNAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEDKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDCDM. 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06912 625 MobiDBLite consensus disorder prediction 1 20 - -
Seca12g06912 625 FunFam Putative LOV domain-containing protein 283 488 - -
Seca12g06912 625 Pfam F-box domain 212 249 IPR001810 GO:0005515
Seca12g06912 625 NCBIfam PAS domain S-box protein 73 161 IPR000014 -
Seca12g06912 625 SUPERFAMILY Kelch motif 292 499 IPR015915 GO:0005515
Seca12g06912 625 SUPERFAMILY F-box domain 207 280 IPR036047 GO:0005515
Seca12g06912 625 Pfam Galactose oxidase, central domain 420 471 - -
Seca12g06912 625 Pfam Galactose oxidase, central domain 371 418 - -
Seca12g06912 625 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 41 619 - -
Seca12g06912 625 Pfam Galactose oxidase, central domain 306 356 - -
Seca12g06912 625 Pfam Kelch motif 530 577 IPR011498 GO:0005515
Seca12g06912 625 SUPERFAMILY Galactose oxidase, central domain 421 620 IPR011043 -
Seca12g06912 625 Gene3D PAS domain 54 173 - -
Seca12g06912 625 Pfam PAS domain 67 161 IPR000014 -
Seca12g06912 625 FunFam Putative LOV domain-containing protein 489 621 - -
Seca12g06912 625 Gene3D - 205 256 - -
Seca12g06912 625 ProSiteProfiles PAS repeat profile. 73 122 IPR000014 -
Seca12g06912 625 Gene3D - 512 621 IPR015915 GO:0005515
Seca12g06912 625 Gene3D - 281 511 IPR015915 GO:0005515
Seca12g06912 625 SUPERFAMILY PYP-like sensor domain (PAS domain) 68 162 IPR035965 -
Seca12g06912 625 CDD PAS 57 161 IPR000014 -
Seca12g06912 625 SMART pac_2 126 167 IPR001610 -
Seca12g06912 625 CDD F-box_AtADO-like 211 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06912 Seca-Chr12 161077210 161080077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06912 56 163 AGC Kinase Gene Family AT5G58140 41.667 2.61e-17 84.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06912 12 161077210 161080077 Seca12g06912 12 161077210 161080077 ECH