Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06904 ATGTCGTGGGAAGACGAGATTGTTATGCGTGATGTCACGAATGCGGGTCTTGTCGTCAGTGATCGCATTGGTCGTGAAGTTTCGTCTCAGCTCGACCTCGAAGAAGCTCTAGAGGCCTCCAGATATGCTAGCCATCCTTATTCCACTCACCCCAAAGAGTGGCCCCCTTTAGTCGAGGTAGTGAATACTTGGGAGTTGCCTCCTGTGCTCATTGAAAGATACAATGCAGCTGGTGGGGAAGGAACTGCTTTTTGTGGAATATTTCCTGAAATACGCAGGGCATGGGCATCTGTTGACAATTCCCTGTTTCTTTGGCGTTTTGATAAGTGGGATGGCCAATGTCCTGAATTTAGCGGGGAGGAACAAGCCATTTGTGCTGTTGGTCTCGCAAAATCAAAACCTGGTGTTTTTGTTGAAGCTATCCAATATCTTTTAATTTTAGCGACGCCTGTTGAGTTAATTTTAGTAGGAGTATGCTGCTCTGGAGGAGCAGATGGTTCAGATCCATTTGCAGAAGTTTCATTACAGCCGTTGCCAGATTATACAATACCATCTGATGGGGTTACAATGACATGTGTAGCATGTACTGATAAGGGCCGCATTTTCCTTGCTGGTCGTGATGGCCACATATATGAGCTTCTTTATTCAACTGGTTCAGGATGGCAAAAACGCTGCAGAAAAATGTGCATCACTGCTGGTCTAGGAAGTGTAATTTCCAGATGGGTCATACCAAATGTGTTCAATTTTGGAGCTGTTGATCCTATTGTTGAAATGGTTTTTGACAATGAGAGACAGATATTGTACGCACGAACTGAAGAGATGAAGCTTCAGGTTTATGTTCTTGGACCAAATGGTGATGGCCCATTAAAGAAAGTGGCTGAAGAGAGGAATCTTATCAATCAGAGGGATGCACATTATGGAGGTAGACAATCAACAGGATCAAGAGTCTCAAGTCGATCACCGAAGCCATCTATTGTTTGCATCTCACCTTTATCTACACTTGAATCCAAGTGGCTACATCTTGTTGCTGTTTTATCAGATGGCAGAAGGATGTACCTTTCTACCTCCCCTTCTAGCGGAAGCCTGAATGGGTTCAACACCAACCATCACAAGCCTAGCTGTTTAAAGGTTGTCACAACAAGGCCTGCTCCTCCTTGGGGTGTTAGTGGTGGTCTCACCTTTGGAACCATGGCTCTTGCTGGTAGACCTCAAAATGAGGATCTCTCACTGAAAGTTGAGGCAGCTTATTGTTCTTCTGGAACTCTTATCCTTTCTGATGCATCACCTCCAACTATGCCTTCACTCCTTGTTTTGAACAGAGATTCAAGCACACAGTCATCACCATCAGGTAATCTAGGGACAGGCACAAGGAGTTCCCGGGCATTACGGGAATCTGTATCTTCTTTACCAGTTGAAGGACGGATGCTTTCTGTGGCAGATGTTTTACCTTTGCCAGATACTGCAGCTACGGTGCAGTCTCTATATTCAGAAATTGAGTTTGGTGGTTATGAGAGCTCAATGGAATCATGTGAAAGGGCATCTGGCAAACTCTGGGCAAGGGGTGACCTCTCAACCCAACATATATTGCCAAGGAGGAGGATTGTCATCTTCAGCACCATGGGCATGATGGAAATTGTTTTTAACAGGCCACTGGACATTCTAAGGCGACTATTAGAATCCAATTCTCCAAGATCAGTTTTAGAAGATTTTTTCAATCGTTTTGGCGCTGGTGAGGCAGCTGCAATGTGTCTAATGCTAGCTGCAAGAATAGTGCATGCTGAAAACCTTATTAGCAATGTTATTGCTGAGAAGGCAGCTGAAGCTTTTGAGGACCCAAGAGTTGTTGGCATGCCACAACTTGAAGGTAGTAGTGCATTATCAAACACGAGAACTGCTGCTGGTGGATTTAGCATGGGCCAGGTTGTTCAGGTGGCGGAACCTGTTTTTTCAGGTGCACATGAAGGGCTATGTTTGTGCTCATCTAGATTGCTTTTTCCTCTATGGGAACTTCCTGTAATGGTTGTAAAAGGAAGTTTAGGTCCTTTAGGCACTTTATCTGAAAATGGGGTAGTTGTATGCAGACTCTCTGTTGGGGCTATGCAAGTCCTTGAACACAAACTCCGATCTTTAGAGAAATTCTTAAGATCTAGAAGGAACCAGAGGAGGGGACTTTACGGCTGTGTAGCAGGTTTAGGAGATCTGAGTGGTTCCATTCTATATGGTAATGGTTCTGCATTAGGTGCCGGGGATCGAAGTATGGTAAGAAACTTGTTTGGTGCGTATTCCAGAAATATGGAGTCCAATGGTGGTGGAACTAGTAATAAAAGGCAAAGGTTACCATATAGTCCTGCAGAATTAGCTGCCATGGAGGTGAGGGCAATGGAGTGCATTAGGCAGTTGCTCCTTAGATCTGGCGAAGCCTTGTTTTTGCTTCAACTTCTTTCACAGCATCATGTCACTCGTTTGATTCAGGGATTTGATGCTAACCTTCAACAGGCATTGGTTCAGTTAACATTTCATCAACTAGTTTGTTCTGAGGAGGGTGACCGTCTTGCTACAAGACTTATATCTGCTCTAATGGAGTATTATACTGGTCCTGATGGCAGGGGAACTGTAGATGACATTAGTAGGAGATTAAGAGAGGGTTGTCCAAGCTACTATAAGGAGTCTGATCACAAATTCTTCTTAGCTGTGGAAGCCCTAGAGAGAGCTGCCGTGTCTATAGATGCTGAGGAAAAGGAGAATCTTGCAAGGGAGGCATTGAATTCCTTAAGTAAAGTTCCAGAATCTGCAGACTTACGCACTGTTTGCAAACGTTTTGAGGATCTAAGGTTTTATGATGCTGTAGTGTGCTTACCCCTTCAAAAGGCACAGGCTCTTGACCCTGCTGGTGATGCTTATAATGATGAAATTGATGCAACTGTCAGAGAACAAGCACTTGCTCAGCGTGAACAGTGTTATGAGATAATTATCAGTGCTTTGCGGTCTCTGAAAGGTGATACTCTGCAGAAGGAATTTGGCTCTCCCATCAGATCTGCTGCTTCACAATCTGCACTTGATCCAACCTCTAGGAAAAAATATATAAGCCAAATTGTTCAGCTGGGTGTCCAATCACCTGACAGAATTTTCCACGAGTATCTTTACCAGGCTATGATTGATTTAGGTCTTGAGAATGAATTGTTAGAGTATGGGGGTCCTGACCTGTTGCCGTTTTTACAAAGTGCTGGTCGTAAACCCATACACGAGGTTCGTGCCGTGACTGCAACAACTTCTCCAATGGGGCAATCAGGAGCACCTATGTCATCTAATCAAGTCAAGTACTATGAACTTTTGGCACGGTATTATGTCTTGAAGCGGCAACATATGCTTGCAGCTCATGCCTTGCTAAGACTAGCTGAGAGGCGTTCTATTGACGGAGTTCCTACTCTTGAACAAAGGTGTCAATACCTAAGTAATGCAGTTCTACAGGCAAAAAACGCAACTAATAATGATGGGTTAGTAGGTTCTACTCGGAGTTCCATTGATAGTGGATTCCTGGATTTGCTTGAAGGGAAGCTCGCTGTTCTTCGGTTTCAGATAAAAATCAAAGAGGAACTAGAGGCTATGGCTTCCAGGTCTGAGGTTTTGCATAGCACATCCAATTCTGACCAAAATGGTTTAGTCCCCGAGGGAAGTTCAACTACTGGTGCTAACGTTGCAAAGGCAACACGAGATAAAGCCAAAGAGCTATCATCAGATGTAAAAAGCATAACACAGTTATATAATGAATATGCCGTTCCTTTTGAGCTTTGGGAGATATGCCTGGAGATGCTGTACTTTGCCAATTATTCCAGTGATAATGACAGCAGCATTGCCAGAGAGACATGGGCTAGAGTTATAGATCAAGCTATTTCAAGAGGTGGCATTGCTGAAGCTTGCTCAGTAATAAAGAGGGTCGGGCCCCGCATTTATCCGGGTGATGGAGCTGTTTTACCGCTTGACATTATTTGTCTTCACCTAGAGAAGGCTGGACTGGAGAGGTTAAATTCAGGGGTTGAATCTGTTGGAGATGAAGACATTGCAAGAGCCCTTGTTTCTGCATGTAAGGGTGCAGCTGAACCTGTATTGAACGCATATGATCAATTGTTATCAAATGGGGCTATTTTGCCATCCCCAAATCTTAGATTGCGTATGCTGAGATCAGTTCTAGTGGTACTTCGTGAGTGGGCTATGTCTGTATATTCACAGAGGATGGGTACTAGTTCCGTTGGGTCTCCCCTAATACTAGGCGGAGGCTTCTCATTGGAACGTACAGTTGCTAGCCAAGGGATTCGGGACAAGATCACAAGTTCGGCGAACAGGTATATGACTGAAGTGCGGAGGCTAGCCCTTCCACAGAGTCAAACAGAACTTGTCTACCGCGGATTTAGAGAACTTGAAGAATCACTTATAAGTCCTCATTCATTTGATCGATTTTGA 4458 0.4424 MSWEDEIVMRDVTNAGLVVSDRIGREVSSQLDLEEALEASRYASHPYSTHPKEWPPLVEVVNTWELPPVLIERYNAAGGEGTAFCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEFSGEEQAICAVGLAKSKPGVFVEAIQYLLILATPVELILVGVCCSGGADGSDPFAEVSLQPLPDYTIPSDGVTMTCVACTDKGRIFLAGRDGHIYELLYSTGSGWQKRCRKMCITAGLGSVISRWVIPNVFNFGAVDPIVEMVFDNERQILYARTEEMKLQVYVLGPNGDGPLKKVAEERNLINQRDAHYGGRQSTGSRVSSRSPKPSIVCISPLSTLESKWLHLVAVLSDGRRMYLSTSPSSGSLNGFNTNHHKPSCLKVVTTRPAPPWGVSGGLTFGTMALAGRPQNEDLSLKVEAAYCSSGTLILSDASPPTMPSLLVLNRDSSTQSSPSGNLGTGTRSSRALRESVSSLPVEGRMLSVADVLPLPDTAATVQSLYSEIEFGGYESSMESCERASGKLWARGDLSTQHILPRRRIVIFSTMGMMEIVFNRPLDILRRLLESNSPRSVLEDFFNRFGAGEAAAMCLMLAARIVHAENLISNVIAEKAAEAFEDPRVVGMPQLEGSSALSNTRTAAGGFSMGQVVQVAEPVFSGAHEGLCLCSSRLLFPLWELPVMVVKGSLGPLGTLSENGVVVCRLSVGAMQVLEHKLRSLEKFLRSRRNQRRGLYGCVAGLGDLSGSILYGNGSALGAGDRSMVRNLFGAYSRNMESNGGGTSNKRQRLPYSPAELAAMEVRAMECIRQLLLRSGEALFLLQLLSQHHVTRLIQGFDANLQQALVQLTFHQLVCSEEGDRLATRLISALMEYYTGPDGRGTVDDISRRLREGCPSYYKESDHKFFLAVEALERAAVSIDAEEKENLAREALNSLSKVPESADLRTVCKRFEDLRFYDAVVCLPLQKAQALDPAGDAYNDEIDATVREQALAQREQCYEIIISALRSLKGDTLQKEFGSPIRSAASQSALDPTSRKKYISQIVQLGVQSPDRIFHEYLYQAMIDLGLENELLEYGGPDLLPFLQSAGRKPIHEVRAVTATTSPMGQSGAPMSSNQVKYYELLARYYVLKRQHMLAAHALLRLAERRSIDGVPTLEQRCQYLSNAVLQAKNATNNDGLVGSTRSSIDSGFLDLLEGKLAVLRFQIKIKEELEAMASRSEVLHSTSNSDQNGLVPEGSSTTGANVAKATRDKAKELSSDVKSITQLYNEYAVPFELWEICLEMLYFANYSSDNDSSIARETWARVIDQAISRGGIAEACSVIKRVGPRIYPGDGAVLPLDIICLHLEKAGLERLNSGVESVGDEDIARALVSACKGAAEPVLNAYDQLLSNGAILPSPNLRLRMLRSVLVVLREWAMSVYSQRMGTSSVGSPLILGGGFSLERTVASQGIRDKITSSANRYMTEVRRLALPQSQTELVYRGFRELEESLISPHSFDRF. 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06904 1485 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 874 1292 IPR007187 -
Seca12g06904 1485 MobiDBLite consensus disorder prediction 440 464 - -
Seca12g06904 1485 Gene3D - 531 883 - -
Seca12g06904 1485 Gene3D - 1180 1416 IPR042538 -
Seca12g06904 1485 MobiDBLite consensus disorder prediction 304 321 - -
Seca12g06904 1485 Pfam Nup133 N terminal like 54 543 IPR014908 -
Seca12g06904 1485 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 12 1478 IPR004870 GO:0005643|GO:0006913|GO:0017056
Seca12g06904 1485 Gene3D Nucleoporin, helical domain, central subdomain 1057 1154 IPR042537 -
Seca12g06904 1485 FunFam Nuclear pore complex protein NUP155 894 1054 - -
Seca12g06904 1485 FunFam Nuclear pore complex protein NUP155 1180 1416 - -
Seca12g06904 1485 FunFam Nuclear pore complex protein NUP155 1057 1154 - -
Seca12g06904 1485 MobiDBLite consensus disorder prediction 302 321 - -
Seca12g06904 1485 Gene3D - 894 1054 IPR042533 -
Seca12g06904 1485 MobiDBLite consensus disorder prediction 1211 1233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06904 Seca-Chr12 160998652 161010319 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06904 12 160998652 161010319 Seca12g06904 12 160998652 161010319 ECH