Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06903 ATGGCCGACGCTCTCTCGTTGATTCCGGCAGCCGTGCTCCGCAACCTTGCTGACAAGCTCTATGAGAAGCGCAAGAATGCTGCTCTTGAGATTGAGGGGATAGTGAAGCAGCTAGCTGCTGCTGGGGATCATGATAAAATAACGGCTGTGATCAATTTGTTGACTACGGAATTCACTTATTCGCAACAAGCCAATCACCGGAAGGGAGGATTGATAGGATTAGCTGCTGCAACTGTGGGGTTGACTTCTGAAGCAGCTCAGCATCTTGAGCAAATTGTGCCTCCTGTGTTAAATTCTTTCTCTGACCAAGATAGCAGAGTTCGTTATTATGCTTGTGAAGCACTATATAATATAGCTAAGGTTGTGAGAGGGGATTTTATTATATTCTTCAACCAGATCTTTGATGCCTTATGCAAGCTTTCTGCAGACTCAGATGCCAATGTACAGAGTGCTGCCCACCTCTTAGATCGGCTTGTGAAGGATATTGTGACTGAAAGTGATCAGTTCAGTATTGAAGAATTTATACCACTGCTGAGGGAGCGCATGAATGTATTGAATCCATATGTCCGGCAGTTTTTGGTAGGATGGATTACTGTATTGGACAGTGTCCCAGATATTGACATGCTTGGTTTTCTTCCTGATTTTCTTGATGGCTTGTTTAATATGTTAAGTGATTCAAGTCATGAAATACGTCAACAAGCTGATTCAGCTCTTTCAGAGTTTCTTCAAGAGATTAAGAACTCCCCATCTGTAGATTATGGTCGAATGGCTGAAATACTGGTACAGAGGGCGGGTTCTCCGGATGAATTTACAAGGCTAACAGCTATCACATGGATAAATGAGTTCGTCAAACTTGGTGGGGACCAGCTTGTTCCATATTATGCTGCCATTCTTGGAGCCATTTTGCCATGCATATCAGATAAAGAAGAGAAAATTAGAGTTGTTGCCCGTGAAACCAATGAAGAGCTACGTGCCATCAAGGCTGATCCAGCTGAAGCATTTGATGTTGGAGCAATCCTCTCCATTGCCAGGAGGCAATTATCTAGTGAATGGGAGGCTACTCGAATTGAAGCTTTGCACTGGATATCAACCCTTTTAAACAAATATCGTACTGAGGTTTTGCAATATCTGAATGACATATTTGACACCCTGCTCAAGGCACTTTCAGATCCATCTGATGAGGTTGTTCTTATAGTTCTTGATGTTCATGCATGCATTGCAAAAGATCCTCAACACTTTCGGCAGCTTGTTGTTTTCCTAGTGCACACTTTCCGGGTAGACAATTCTCTTTTGGAAAAGCGCGGTGCTTTAATAATCCGTCGGCTTTGTGTGCTTTTGAATGCTGAGAGAGTCTACCGTGAACTTTCTACAATACTAGAAGGGGAATCCGACTTGGATTTTGCATCAATTATGGTTCAGGCTTTGAATTTGATCTTACTTACATCATCAGAACTATCTGAGATTAGAGATCTTTTGAAGCAATCACTGGTAAATCCTGCCGGGAAGGATTTATATGTTTCTTTGTATGCCTCATGGTGCCATTCTCCAATGGCTATTATAAGTCTTTGTTTATTAGCTCAGACTTACCAACATGCGAGTGCTGTGATTCAATCTCTGGTAGAGGAGGATATTAATGTCAAATTCTTAGTTCAGCTGGATAAATTGATTCGCTTGCTGGAAACTCCAGTCTTCACTTATCTTAGATTGCAGCTTCTCGAACCTGGAAGATATACATGGTTGTTTAAAGCTTTGTATGGTCTTCTGATGTTGCTTCCTCAGCAAAGTGCTGCCTTCAAGATACTAAAAACTCGCTTAAAAGCTGTGCCATCATATTCTTTCAATGGTGAGCAACTGAAGAAAACATCCTCAGGGAATCCCTATCAATTTCTCCATCACATGTCTGGTGGATCTCAAATCTCTGAAGATGGTAACATAACTGTGGATGGTGGGAACTCACATAATGGAATAAATTTTGTTGCAAGGCTACAACAGTTTCAGCAAATGCAGCACCAGCATCGTGTGCATTTGAAAACACAGGCACAATCACGCAAAAATTCTGCCTCATTATCTAATAAGGAGGCACAAAGAGAGGAAGAACCAAGGCGACCTCAGTTGAGTGAGCTTAATGTTCCTCCTTCAAGATCATCCAAGAGAGGTCCAGTGTAG 2166 0.4201 MADALSLIPAAVLRNLADKLYEKRKNAALEIEGIVKQLAAAGDHDKITAVINLLTTEFTYSQQANHRKGGLIGLAAATVGLTSEAAQHLEQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAGSPDEFTRLTAITWINEFVKLGGDQLVPYYAAILGAILPCISDKEEKIRVVARETNEELRAIKADPAEAFDVGAILSIARRQLSSEWEATRIEALHWISTLLNKYRTEVLQYLNDIFDTLLKALSDPSDEVVLIVLDVHACIAKDPQHFRQLVVFLVHTFRVDNSLLEKRGALIIRRLCVLLNAERVYRELSTILEGESDLDFASIMVQALNLILLTSSELSEIRDLLKQSLVNPAGKDLYVSLYASWCHSPMAIISLCLLAQTYQHASAVIQSLVEEDINVKFLVQLDKLIRLLETPVFTYLRLQLLEPGRYTWLFKALYGLLMLLPQQSAAFKILKTRLKAVPSYSFNGEQLKKTSSGNPYQFLHHMSGGSQISEDGNITVDGGNSHNGINFVARLQQFQQMQHQHRVHLKTQAQSRKNSASLSNKEAQREEEPRRPQLSELNVPPSRSSKRGPV. 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06903 721 FunFam protein VAC14 homolog 126 248 - -
Seca12g06903 721 PANTHER TAX1 BINDING PROTEIN-RELATED 7 691 IPR026825 GO:0006661|GO:0070772
Seca12g06903 721 Pfam Vacuolar 14 Fab1-binding region 65 161 - -
Seca12g06903 721 Gene3D - 1 247 IPR011989 -
Seca12g06903 721 MobiDBLite consensus disorder prediction 690 704 - -
Seca12g06903 721 Coils Coil 677 697 - -
Seca12g06903 721 SUPERFAMILY ARM repeat 3 542 IPR016024 -
Seca12g06903 721 Gene3D - 248 416 IPR011989 -
Seca12g06903 721 MobiDBLite consensus disorder prediction 669 689 - -
Seca12g06903 721 MobiDBLite consensus disorder prediction 669 721 - -
Seca12g06903 721 FunFam ARM repeat superfamily protein 7 125 - -
Seca12g06903 721 Pfam Vacuolar protein 14 C-terminal Fig4p binding 429 608 IPR021841 -
Seca12g06903 721 FunFam protein VAC14 homolog isoform X1 249 410 - -
Seca12g06903 721 ProSiteProfiles HEAT repeat profile. 92 127 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06903 Seca-Chr12 160983988 160993250 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06903 12 160983988 160993250 Seca12g06903 12 160983988 160993250 ECH