Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06902 ATGGAGTCCAAGGCTCTGCGATTCATAACTCACCAATCAATTTTCCCCACCGTTCGATCTGGGGACCTTGATGGGCTAAAGCAATTGGTGGAGCAGCTGAAGCAGGACGATGATGGATCATCAATTTCTGATGTCATGTCACTCCAGAACGATGCTGGAGAGACCGCGCTTTACATCGCTGCAGAGCATAATCTGCAAGAGGTGTTCAGCTTCTTGCTCAAGTTGTGTGACTTTGAGGTTGTTAAGATTCGTTCTAAGTCTGATATGAACGCCTTTCACGTTGCAGCCAAGCGTGGCAATCTAGATATCGTGAGGGAGCTTTTGAGTACTTGGCCTGGGGTTTGCAAGTTATGCGACTCCTCAAACACCAGCCCCCTATATTCTGCTGCAGTTCAAGACCACTTGGATGTGGTGAATGCTATTTTGGATGTTGATGTCAGTTCCATGTTTGTAGTTAGGAAAAATGGCAAAACTTCATTACACAATGCTGCTAGGTATGGCCTCCTTCGTATTGTGAAAACACTTATTGCCCAGGACCCCGGAATAATCTGCATCAACGATAAGAAAGGTCAAACTGCACTGCATATGGCTGTCAAGGGACAGAGTACAGCAGTGGTGGAGGAGATATTGCTGGCTGATCCTACTATATTGAATGAACGAGATAAGAAGGGTAATACAGCTCTTCACATGGCTACAAGGAAAGCCCGTTCACAGATCGTGATCCTTTTGCTAAGCTATGCAGCTGTGGATGTTAATGCCATCAATAAGCACCAGGAAACAGCCTTGGATTTGGCAGATAAACTGCCATATGGAGATTCTGCTTTAGAAATCACGGAAGCCCTTACAGAATATGGTGCTAAGTATGCCAGGAATGTTGGTAAAGTGGATGAAGCCATGGAGCTTAAAAGAACTGTGAGTGATATAAAGCATGAGGTGCAGTCACAACTTATACAAAATGAAAAAACTCGCCGACGAGTTTCTGGTATTGCTAAGGAATTGAAGAAACTTCATAGAGAAGCAGTTCAAAACACCATTAATTCTGTCACTGTCGTTGCTGTCCTTTTTGCCTCAATAGCATTCTTGGCTATATTCAATTTGCCTGGTCAATATATAATGGAAGGATCAGAGTCAGGGAAGGCTAATATAGCCGATCGTGTTGGATTCCAAGTTTTCTGCCTCTTGAATTCTACATCCCTTTTCATTTCTCTTGCAGTTGTTGTAGTTCAAATCACTTTGGTAGCCTGGGACACAAGGGCTCAAAAGCAGCTTGTGTCAGTGGTTAACAAGCTAATGTGGGCTGCATGTGCTTGCACTTGTGGTGCTTTTCTAGCAATAGCTTTTGAGGTTGTTGGAAAGAAAAAATGGATGGCTATAACCATAACCATTTTGGGAGTACCAATTCTGGTTGGGACTCTAGCAAGCATGTGCTACTTTGTTTTCCGACAACATTTTGGGATTTTCCGCAGTGATTCCCAGAGACGCATCAAGAGAGCAAGTGGAAGCAAATCTTTCTCATGGTCTTACTCTGCAAATATCTCAGATTTGGATGAGTATAATTCTGACATTGAGAAGATATATGCCTTGTAA 1587 0.4323 MESKALRFITHQSIFPTVRSGDLDGLKQLVEQLKQDDDGSSISDVMSLQNDAGETALYIAAEHNLQEVFSFLLKLCDFEVVKIRSKSDMNAFHVAAKRGNLDIVRELLSTWPGVCKLCDSSNTSPLYSAAVQDHLDVVNAILDVDVSSMFVVRKNGKTSLHNAARYGLLRIVKTLIAQDPGIICINDKKGQTALHMAVKGQSTAVVEEILLADPTILNERDKKGNTALHMATRKARSQIVILLLSYAAVDVNAINKHQETALDLADKLPYGDSALEITEALTEYGAKYARNVGKVDEAMELKRTVSDIKHEVQSQLIQNEKTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASIAFLAIFNLPGQYIMEGSESGKANIADRVGFQVFCLLNSTSLFISLAVVVVQITLVAWDTRAQKQLVSVVNKLMWAACACTCGAFLAIAFEVVGKKKWMAITITILGVPILVGTLASMCYFVFRQHFGIFRSDSQRRIKRASGSKSFSWSYSANISDLDEYNSDIEKIYAL. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06902 528 ProSiteProfiles Ankyrin repeat region circular profile. 155 176 - -
Seca12g06902 528 SMART ANK_2a 121 151 IPR002110 GO:0005515
Seca12g06902 528 SMART ANK_2a 189 218 IPR002110 GO:0005515
Seca12g06902 528 SMART ANK_2a 223 253 IPR002110 GO:0005515
Seca12g06902 528 SMART ANK_2a 52 80 IPR002110 GO:0005515
Seca12g06902 528 SMART ANK_2a 87 116 IPR002110 GO:0005515
Seca12g06902 528 SMART ANK_2a 155 185 IPR002110 GO:0005515
Seca12g06902 528 Gene3D - 148 308 IPR036770 -
Seca12g06902 528 Gene3D - 6 147 IPR036770 -
Seca12g06902 528 ProSiteProfiles Ankyrin repeat profile. 223 256 IPR002110 GO:0005515
Seca12g06902 528 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 18 507 - -
Seca12g06902 528 Coils Coil 319 339 - -
Seca12g06902 528 SUPERFAMILY Ankyrin repeat 14 286 IPR036770 -
Seca12g06902 528 Pfam Ankyrin repeats (3 copies) 26 108 IPR002110 GO:0005515
Seca12g06902 528 Pfam Ankyrin repeats (3 copies) 160 253 IPR002110 GO:0005515
Seca12g06902 528 ProSiteProfiles Ankyrin repeat region circular profile. 223 248 - -
Seca12g06902 528 ProSiteProfiles Ankyrin repeat profile. 155 187 IPR002110 GO:0005515
Seca12g06902 528 ProSiteProfiles Ankyrin repeat profile. 189 222 IPR002110 GO:0005515
Seca12g06902 528 Pfam Domain of unknown function 339 446 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06902 Seca-Chr12 160978693 160982306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06902 1 528 Miscellaneous Gene Families AT2G01680 70.391 0.0 749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06902 12 160978693 160982306 Seca12g06902 12 160978693 160982306 ECH