Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06896 ATGGTTATGGCTACTTCGAAGGCGGTAATGTCTTCGTTGATCCACTTGCGTCCACTAACATGCGCCGCATCGGCATCAGCATCACGAATAGTTCCCCATCCACCTGACCTCATCAAATGGGTTACCAGAGAAGGTGGCTTCGTGCACGGGGCGGTGAAGATAGCACAACTCGACTCCAATGGTCTTGGTCTCGGATTAGTGGCTAACCAAGAAATCCCAATGGGCACTGACCTTATTGTTCTTCCCCACCACATTCCTTTGCACTCTACCCCTCACGACACTGTGCTACTTGATTTGGCGCGCCATGTTCCTGAGGAACTATGGGCAATGAAACTGGGTTTGAAGCTACTGCAAGAAAGAGCAAAAGTTGGATCATTTTGGTGGCCATACGTCAGCAATCTCCCAGAAACGTACAGTGTGCCTATCTTCTTTCCTGGGGAAGACATCAAGAACTTGCAGTATGCTCCTCTTCTTCACCAGGTAAACAAAAGATGCCGGTTTCTTCTTGATTTTGAGCAACAAGTCAAACATGTTTTAGCCAGTCTTCCACCAGATAAGCATCCTTTTGGTGGCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCGATGTCAGCAGTCTCATCTAGAGCATTCCGGTTACATGGTAACAAGAATTCAAATGGGACAAACATGGACATACCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAACAAGATACCAGTAGCACAAAGATGCAAGTGAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCTTTATTACTTTGCTATGGCTGTTTAAGCAATGATCTTTTCCTTCTTGATTACGGATTTGTGATACACTCAAACCCCTATGACTGTATCGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCTGGGGTTTCTTCACCTAACTTCTCAGCACCTGCACCCTGGCAGGAATTGATTTTATCTCAGCTAAATCTAGCTGGAGAAGCTCCATATCTCAAGGTGAGCTTAGGTGGTCAAGAAATAATAGAGGGCCGCCTGTTGGCTGCATTAAGAGTACTCCTTGCAAGTGATATGGAAACTGTAAAAAAGTATGACCTCAGCACGCTCAAGTCTTTCCATGCTGAGGCTCCTCTTGGTGTTGCAAATGATATTGCTGTATTTCGTACCCTAATTGCTCTGTGTGTCATTGCACTGGGACACTTTCCCACCAAAATAATGGATGATGAATCACTTTTGAAGCAGGGTGCTTCAGGTTCAACTGAGTTAGCCATTCAGTTTAGAATCCAAAAGAAATCTGTAATTATAGATGTGATGAGAAATCTCACAAGGAGGGTAAAGCTTCTCTCATCAAAGGAAACAGAGACTGCCGAAGGCTAA 1422 0.4459 MVMATSKAVMSSLIHLRPLTCAASASASRIVPHPPDLIKWVTREGGFVHGAVKIAQLDSNGLGLGLVANQEIPMGTDLIVLPHHIPLHSTPHDTVLLDLARHVPEELWAMKLGLKLLQERAKVGSFWWPYVSNLPETYSVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEQQVKHVLASLPPDKHPFGGQEVDASSLGWAMSAVSSRAFRLHGNKNSNGTNMDIPMMLPLIDMCNHSFNPNARIVQEQDTSSTKMQVKVVAETAIKEDDPLLLCYGCLSNDLFLLDYGFVIHSNPYDCIELKYDGALLDAASMAAGVSSPNFSAPAPWQELILSQLNLAGEAPYLKVSLGGQEIIEGRLLAALRVLLASDMETVKKYDLSTLKSFHAEAPLGVANDIAVFRTLIALCVIALGHFPTKIMDDESLLKQGASGSTELAIQFRIQKKSVIIDVMRNLTRRVKLLSSKETETAEG. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06896 473 Gene3D - 328 471 IPR036464 -
Seca12g06896 473 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 288 467 IPR036464 -
Seca12g06896 473 ProSiteProfiles SET domain profile. 52 278 IPR001214 GO:0005515
Seca12g06896 473 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 35 438 - -
Seca12g06896 473 FunFam Histone-lysine N-methyltransferase setd3 5 291 - -
Seca12g06896 473 Pfam SET domain 63 278 IPR001214 GO:0005515
Seca12g06896 473 CDD SET_LSMT 51 292 - -
Seca12g06896 473 FunFam SET domain containing protein 314 467 - -
Seca12g06896 473 SUPERFAMILY SET domain 32 296 IPR046341 -
Seca12g06896 473 SMART set_7 50 284 IPR001214 GO:0005515
Seca12g06896 473 Gene3D set domain protein methyltransferase, domain 1 7 291 - -
Seca12g06896 473 Pfam Rubisco LSMT substrate-binding 327 448 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06896 Seca-Chr12 160944555 160947595 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca12g06896 SET 6.1e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06896 12 160944555 160947595 Seca12g06896 12 160944555 160947595 ECH