Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06889 ATGGTTTGCTTGGTATCTCGCTCAGGAAGAGAGTTGCAGAGATACAACAACATGGGTGGCCGCCAAGTTGTAGGATGCATACCTTATAGATATAAAGAAGACATAGATGGTAATATGACCAAAGAATTGGAGGTGCTAGTTGTTAGTTCACAGAAAGGTCAAGGATTCATGTTCCCTAAGGGAGGATGGGAACTTGATGAATCTGTAGAAGAAGCAGCTTGCAGGGAATCCCTTGAAGAAGCAGGAGTCATTGGAATCGTTGAGTGTGAATTGGGCCAATGGAGTTTCATTAGCAAAAGACATGGTATATTTTATGAAGGGCACATGTTCCCCTTGTTTGTCAAGGAACAACTTGATCTGTGGCCTGAGAAAAATCTTCGGAGAAGAGTGTGGATGACTGTTGCTCAAGCCAGAGAAGTTTGTCAGCATTGGTGGATGAAGGAAGCATTGGATATATTGGTTCAACGACTCATGTCTTCACAGCATTAA 489 0.4274 MVCLVSRSGRELQRYNNMGGRQVVGCIPYRYKEDIDGNMTKELEVLVVSSQKGQGFMFPKGGWELDESVEEAACRESLEEAGVIGIVECELGQWSFISKRHGIFYEGHMFPLFVKEQLDLWPEKNLRRRVWMTVAQAREVCQHWWMKEALDILVQRLMSSQH. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06889 162 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 156 - -
Seca12g06889 162 CDD Nudix_Hydrolase_9 22 147 IPR047198 GO:0016462
Seca12g06889 162 ProSitePatterns Nudix box signature. 61 82 IPR020084 GO:0016787
Seca12g06889 162 FunFam Nudix hydrolase 17, mitochondrial 5 156 - -
Seca12g06889 162 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 5 158 - -
Seca12g06889 162 Pfam NUDIX domain 42 140 IPR000086 -
Seca12g06889 162 ProSiteProfiles Nudix hydrolase domain profile. 19 154 IPR000086 -
Seca12g06889 162 SUPERFAMILY Nudix 14 156 IPR015797 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06889 Seca-Chr12 160912887 160915032 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06889 12 160912887 160915032 Seca12g06889 12 160912887 160915032 ECH