Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06881 ATGGTTCTGTTTCTTCTCTTCCTTCTCACAATCTCAGCCATAACAACCACATCAACCTCCTCCACCGACTCTTTCATCTTCGGTGGTTGTTCTCAGTTGAAATACTCGCCGGGTTCCGCCTACGAAAACAGTGTCAACTCGCTCCTCACCTCCCTTGTCAACTCAGCCACGTTTACCAATTACAACAACTTCACCATTCAGGCCACCCCTGCCTCCGACACCGTCTACGGCCTCTTTCAGTGCCGCGGGGACCTCAACAACGACCAGTGCTCCCGCTGCGTGGCGAGTGCGGTGAGTCAACTCAACACTCTCTGCTTCGACTCGTACGGTGGCGCGTTGCAGCTCGAGGGATGTTTCGTGAAGTATGATAATGCTACGTTCCTTGGTGTGGAGGACAAGACGGAGGTGATCAAGAAATGTGGACCGTCGATTGGATTGACATCGGATGCGTTGACCCGAAGGGATGATGTGCTGGCGTATTTACAGACGTCGGATGGGCTTTACAAGACGTACAGGGTTAGTGGCTCAGGGGATTATCAGAGTGTGGCGCAGTGCACGGGGGATTTGAGTCCCAGCGAGTGCCAGGATTGCCTTTCTGATGCCATCCAACGGTTGAAAACAGAGTGTGGGGCCTCCACTTGGGGGGACATGTACCTGGCGAAGTGCTACGCGCGATACTCCGAAGGTGGGACTCATTCGCGAGGCAGTGATAACTATGATAGCAATCACAACGATGATGAGATTGAGAAGACACTTGCCATACTAATTGGACTCATTGCTGGGGTTGCCCTAATCATCGTTTTCCTTTCCTTCTTGTCCAAGGTCTGCGAAAAGCAGAAAGGTGGTAAATAA 852 0.52 MVLFLLFLLTISAITTTSTSSTDSFIFGGCSQLKYSPGSAYENSVNSLLTSLVNSATFTNYNNFTIQATPASDTVYGLFQCRGDLNNDQCSRCVASAVSQLNTLCFDSYGGALQLEGCFVKYDNATFLGVEDKTEVIKKCGPSIGLTSDALTRRDDVLAYLQTSDGLYKTYRVSGSGDYQSVAQCTGDLSPSECQDCLSDAIQRLKTECGASTWGDMYLAKCYARYSEGGTHSRGSDNYDSNHNDDEIEKTLAILIGLIAGVALIIVFLSFLSKVCEKQKGGK. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06881 283 ProSiteProfiles Gnk2-homologous domain profile. 132 231 IPR002902 -
Seca12g06881 283 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 3 276 - -
Seca12g06881 283 ProSiteProfiles Gnk2-homologous domain profile. 23 127 IPR002902 -
Seca12g06881 283 FunFam cysteine-rich repeat secretory protein 3 22 127 - -
Seca12g06881 283 Gene3D - 150 229 IPR038408 -
Seca12g06881 283 Gene3D - 21 127 IPR038408 -
Seca12g06881 283 FunFam Cysteine-rich repeat secretory protein 60 148 229 - -
Seca12g06881 283 Pfam Salt stress response/antifungal 174 227 IPR002902 -
Seca12g06881 283 Pfam Salt stress response/antifungal 30 124 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06881 Seca-Chr12 160816484 160819559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06881 3 226 Pollen Coat Proteome AT4G20670 25.620 4.14e-15 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06881 12 160816484 160819559 Seca12g06881 12 160816484 160819559 ECH