Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06879 ATGGGTGACATGAAAGATAAGGTAAAGGGGTTCATGAAGAAAGTCAACAACCCCTTCTCCTCTTCATCCTCTGGCAAATTCAAGGGCCAAGGAAGAGTTTTGGGATCTTCTTCTTCTTCTTCCTCTTCCTCTGGACCCACCAATTCCATTCCTAACCCTCGCTACACTCCCACCCACAATCCTAATTCCAATTCCAAACCTAGTTCGGCTCCAACCACGAATCTCAGGCCCTTGCCCCAAAAGACGATCACTTCGGAGCATAATAGTAAAACCGAGGGGGCTCGCAAACCTGCAGATGGGTTTGACCCTTTTGATTCATTGGTAACTTCATCCAAGAGATCTCAAAACGGGTATTCAGTGAATGTGTATGAATGCCCCATTTGTAAACAACCCTTTAGATCCGAAGAAGAGGTGTCTGAACATGTGGATAGCTGTTTGAGTAACCCAGTTGAGGGTGATGATGGAAAGGGTGTCTCAGAATTGCCAGGGAGTGAAATTGAGTCTGATAGTGAGTTGGAGGTTTGTGTTGGTACTTACATTTCAGGTAAGCCATCTGATGGATCCGTTGATGTTGTTCTCAAACTGTTGAGGAATATTTCTAGGGAACCGGAGAATGTCAAGTTTAGGAAGATCAGGATGAGTAATCCAAAGATAAAAGAGGCTGTTGGTGAGGTTCCTGGTGGAGTTGAGTTGCTGAGCTTTGTAGGCTTTGAGCTTAGGGAAGAGAATGGGGAGACATGGGCAGTGATGGAGGCTCCTACGGAGGAGCAAATAAATTTGATTAAGAAAGTACTAGTGTTACTGGAGTCACAACTGGCACAGGAGCCTTCAAAGAGGGACACTTTGGCATCTACAACTTCTGCTGAGAAAGATGTAAAGGCTGAACCAAAGCAGGTTGACAGACAGGTGAAGGTCTTCTTTGCTGTCCCTGAAAGCGTTGCAGCTAAAATTGAACTACCAGATTCCTTCTATAATCTTTCATCTGAAGAGGTGAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGAAGAATCTCAGCTTTTAATCCCCAAGTCACTTAAAGAAAAGCAAGCTAAAGCTGCCAGGAAGAGATACACAAAAACTATTATTAGGATTCAGTTTCCAGACGGAGTTGTACTTCAAGGTGTATTTTATCCATGGGAACCAACTACTGCTCTCTATGAGGTTTGTCCTTTGCTGCTTGATTTTAAGCTCTATTTTTCTCATGTTTTGGACAACAGACGTGATGATATGCAACTCAGCAACGTTCTTGTTTTTTACATGTCGATGAAGCAGTTTGTCAGCTCCGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCATCCTGTAGTTGTGCTACGGCGGGTGATCCCTCATTTTCCAAAAGCAGGGGAAAATGCTAAAACAATAGAGGAAGAGGACCTGGTACCTTCTGCTCTAATTAAGTTCAAGCCCCTGGAAACAGATTCTGTGGTTTTCACCGGTCTCAAAAATGAATTCCTTGAAATCAGTGAACCACTTGTAAATAGTTAA 1536 0.4303 MGDMKDKVKGFMKKVNNPFSSSSSGKFKGQGRVLGSSSSSSSSSGPTNSIPNPRYTPTHNPNSNSKPSSAPTTNLRPLPQKTITSEHNSKTEGARKPADGFDPFDSLVTSSKRSQNGYSVNVYECPICKQPFRSEEEVSEHVDSCLSNPVEGDDGKGVSELPGSEIESDSELEVCVGTYISGKPSDGSVDVVLKLLRNISREPENVKFRKIRMSNPKIKEAVGEVPGGVELLSFVGFELREENGETWAVMEAPTEEQINLIKKVLVLLESQLAQEPSKRDTLASTTSAEKDVKAEPKQVDRQVKVFFAVPESVAAKIELPDSFYNLSSEEVRREAELRRKKIEESQLLIPKSLKEKQAKAARKRYTKTIIRIQFPDGVVLQGVFYPWEPTTALYEVCPLLLDFKLYFSHVLDNRRDDMQLSNVLVFYMSMKQFVSSALKEPGLEFELMHPVVVLRRVIPHFPKAGENAKTIEEEDLVPSALIKFKPLETDSVVFTGLKNEFLEISEPLVNS. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06879 511 Gene3D - 181 269 - -
Seca12g06879 511 Pfam PUB domain 187 261 IPR018997 -
Seca12g06879 511 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 396 - -
Seca12g06879 511 SMART PGNneu 187 254 - -
Seca12g06879 511 Gene3D Classic Zinc Finger 119 150 - -
Seca12g06879 511 CDD PUB 180 270 - -
Seca12g06879 511 MobiDBLite consensus disorder prediction 1 108 - -
Seca12g06879 511 MobiDBLite consensus disorder prediction 15 87 - -
Seca12g06879 511 SUPERFAMILY Ubiquitin-like 334 401 IPR029071 -
Seca12g06879 511 SUPERFAMILY PUG domain-like 185 269 IPR036339 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06879 Seca-Chr12 160797710 160801255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06879 1 396 C2H2 Transcription Factor Family AT2G01650 58.025 1.75e-148 428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06879 12 160797710 160801255 Seca12g06879 12 160797710 160801255 ECH