Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06876 ATGGAGAGAGATTTCATGGGTCTGAGCTCAAAAGAACCAGTCTCTGTGGTCAAAGAGGAAGTGAACGATGATGGGTGCAAAGACTCAGGCTTCACAAAGGGTTCTGCTGCACAATGGCCCTTCTCGAACAAAGTCTCTGCTGTTCCACATCTGATGTCTTTCAAGGTTTCTCAAGATGATAAGACTAAAATGTCAGTGTCTGATCCCATGACATCTGCTGGGTTTATGACTGTCTTAAGTCCAGATGCATTTGACTCTAGTCAGAAACGCTCTGCTGCTGAACCTCAGAAATCTTTCAATCACAATGGGCAAGGTGGCTTTCACTTTTCGCTGACTCCATATCCTGTACAACATGATGTGAAGATGTTTTCAGTTTCCAATCCAGCAATATCCGTTTCCTTGGGGAACCCATTCCTGAAGAATCATTTTGCAACTGCTGGTCAGAATATGAATGGTACTAGTGTGACACAGCCGCTTCGTGGGGGAATACCTGTTGCAGCGCCTCATTCATCCCTTCCCACCATTGGTGCTGTTGCTGGAATGACTGAATCATGCGTGAAACCTTCTGCGCCTTCTGCCCAACTTACCATCTTCTATGCTGGTACTGTCAATGTCTTTGAAGATATCTCTGCTGAGAAGGTACTCTCTTTGTTTGCACAAGCTATCATGTTGTTGGCTGGAAATTCTAACATGGTACACGCCAAAGCTCAAGCACCTGGCTCTAAGTTGGTAGCTGTTGATGGTGTGCCCGTGAGTCAACCTGCAAATACACCACCCTGCTCAGGTCTTTCAAGTCCTTTATCTGTTTCGTCGCATACTGGTGCACAGTCAGGGAGTGGATCAACTAGCACTGATGAGTTTCTAGCAGCTAAAACAACTGGTGTTCCCACCACTCCTGTTAGCAATGTGGAGCCTCCAAAAGTAGTCAATGCAGCTACTATGTTGACATCAGCTGTTCCTCAAGCTCGGAAAGCATCGTTGGCTCGATTTTTAGAAAAGCGCAAGGAAAGGTTAGTGCTGGTACATTTTTTTTTGGGGAGGGATAATCCGTTATACTATTTCTATTTCTCAACAAAAAGAAAACATAGTATCATCCTTTGA 1101 0.4487 MERDFMGLSSKEPVSVVKEEVNDDGCKDSGFTKGSAAQWPFSNKVSAVPHLMSFKVSQDDKTKMSVSDPMTSAGFMTVLSPDAFDSSQKRSAAEPQKSFNHNGQGGFHFSLTPYPVQHDVKMFSVSNPAISVSLGNPFLKNHFATAGQNMNGTSVTQPLRGGIPVAAPHSSLPTIGAVAGMTESCVKPSAPSAQLTIFYAGTVNVFEDISAEKVLSLFAQAIMLLAGNSNMVHAKAQAPGSKLVAVDGVPVSQPANTPPCSGLSSPLSVSSHTGAQSGSGSTSTDEFLAAKTTGVPTTPVSNVEPPKVVNAATMLTSAVPQARKASLARFLEKRKERLVLVHFFLGRDNPLYYFYFSTKRKHSIIL. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06876 366 MobiDBLite consensus disorder prediction 255 286 - -
Seca12g06876 366 Pfam tify domain 190 227 IPR010399 -
Seca12g06876 366 ProSiteProfiles Tify domain profile. 188 228 IPR010399 -
Seca12g06876 366 SMART tify_2 188 228 IPR010399 -
Seca12g06876 366 Pfam Jas motif 320 339 IPR018467 -
Seca12g06876 366 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 104 339 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06876 Seca-Chr12 160770743 160774655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06876 39 341 Tify Gene Family AT3G17860 35.647 5.69e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca12g06876 tify 1.8e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06876 12 160770743 160774655 Seca12g06876 12 160770743 160774655 ECH