Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05447 ATGGAGAGAGATTTCTTGGGTCTACGCTCAAAATCAAAAGAATCATTATCTGAGCCGAAGGAAGAGAAAGAGATCAACAATGATGGCTGCAAAGACTCAGGCTTCATAAAAGGTTCAGTGGTAAAATGGCCCTTCTCAAATGAAGTCTCTGCTCATCCCCAATTGTTGTCTTTCAATGTTTCAGAAGATGACAAGGCTAAAATGAGGGTGTTTGATTCCATCACATCTGCTGGTTTTTTGGCCATCCCAAGAGATGCATTTGACTCTACTCAGAAACGTGCTGGGGCTGAACTACAGAAATCTTTCAATCATGATGGACATGGTGGCATTCATTTTTCCTTGACTCCGTATCATGTACAACATGATGTGAATTCTGTGAGTCATCCTCATGATGTGAAGATGTTTTCAGTTTCCAATCAAGCAATTTCAGTTTCCATGGGACATCCATTCCTAAAGAACCATTCTGTAACTGTTGGTCAGAACATGAATGGTGTTAATATGAAGCAACCACTACTTGGGGGAATACCTGTTACAGCACCTCATTCAGTTCTTCCCATCACTGGGGCTGTTGCTGGAATGACTAAATCATGTGTGAAACCATCTGCACCTGCTCCTAAACTTACCATATTCTATGCGGGTACTGTGAATGTCTTTGATGATATCTCCCCTGAGAAGGCACAAGCTATCATGTTGTTGGCTGGGAATGGCTTATCTGCAGCCTCTAACATGGCACAGCCTAAAGTTCAGGCACCCAGCTCAAACTTGGCAGCAGGTGATGGTGTACCTGTGAGTCAGCCTATTAATATACCATCATGCTCTGGTCTTCCAAGTCCTTTATCTGTTTCTTCACACACTGGTGCACAGTCAGGGAGTGGCTCAAGTAGCAATGATGAATTTCTGGCAAGTAAAACATCTGGAGGTCCCACCACTTCTGTTAGTAAAGTGGAGACTCCAAAAGTAGTCAATGCAACAACCATGTTTCCATCAGCTGTACCACAGGCTCGCAAAGCATCATTGGCTCGATTTTTGGAGAAGCGCAAGGAAAGGGTGATGAATGTAGCACCATATAACCACAACAAGAAGTATGAGAATGTACCACTGCAGGATACAATGGTTGATAACATCTTTGCAACTACTGGTACTAATACTCCTTCAACCAAGCAAGGATAG 1170 0.4308 MERDFLGLRSKSKESLSEPKEEKEINNDGCKDSGFIKGSVVKWPFSNEVSAHPQLLSFNVSEDDKAKMRVFDSITSAGFLAIPRDAFDSTQKRAGAELQKSFNHDGHGGIHFSLTPYHVQHDVNSVSHPHDVKMFSVSNQAISVSMGHPFLKNHSVTVGQNMNGVNMKQPLLGGIPVTAPHSVLPITGAVAGMTKSCVKPSAPAPKLTIFYAGTVNVFDDISPEKAQAIMLLAGNGLSAASNMAQPKVQAPSSNLAAGDGVPVSQPINIPSCSGLPSPLSVSSHTGAQSGSGSSSNDEFLASKTSGGPTTSVSKVETPKVVNATTMFPSAVPQARKASLARFLEKRKERVMNVAPYNHNKKYENVPLQDTMVDNIFATTGTNTPSTKQG. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05447 389 MobiDBLite consensus disorder prediction 274 316 - -
Seca10g05447 389 SMART tify_2 200 235 IPR010399 -
Seca10g05447 389 ProSiteProfiles Tify domain profile. 200 235 IPR010399 -
Seca10g05447 389 MobiDBLite consensus disorder prediction 1 29 - -
Seca10g05447 389 Pfam tify domain 204 234 IPR010399 -
Seca10g05447 389 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 145 360 IPR040390 -
Seca10g05447 389 Pfam Jas motif 332 356 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05447 Seca-Chr10 123578523 123586916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05447 41 361 Tify Gene Family AT3G17860 35.652 2.93e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca10g05447 tify 4.6e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05447 10 123578523 123586916 Seca10g05447 10 123578523 123586916 ECH