Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05418 ATGCCGGCGTCCGTTGATTTCGCTCAGGTGTCACCTCTCTGCACCACTCTCTGTAAAGGTGGTTTTCGAATTCGAACCGTGGAGCACTTGCTTTCTGCTTTGGAGGCTGCTGGTGTTGATAATTGCAGAATAGAGATAGAGAATTTGGATGCTCAAAGCCACGATGCCGAGATTCCTATATTTGATGGGTCAGCAAAGGAATGGATGGCAGCAGTGGAAGAAATTGGTTTGAAGGTAGCAACTGATCTGGATGGAAAAAGCTGTGAAAAAGTAGCGCCGCATGTGAATGAACCAGTGTATGTTTGGAGGAGTGATTCTTTTGTTGCTGCATTTCCTTCAGAACTGGTTCGCATAACTTATGGCATCAACTTTCCACAGGCTCCTGCTATTGGCTGCCAGTGGTTTTCTACAACCCCCTTGGATAATTTGGTTTATTCCACGCAGATAGCTTTGTCAAGAACCTTCTGCATTTATGAGGAGGTTGAGCAAATGCGCAATGCTGGACTTATCAAAGGGGGTTCTCTAGAAAATGCCATTGTGTGCAGTGCCAGTAAAGGTTGGTTGAATCCACCTCTGCATTTCAGTGATGAACCATGTCGGCACAAGATTTTAGATCTTATTGGTGATCTCTCGCTGTTTGCTCAGTTTGGTAATCAAGGACTCCCAGTGGCACACATCATAGCTTACAAGGGTGGCCATGCATTGCATGCTGATTTGGCACGCCGCCTGATAGGAATGATGTGA 744 0.4597 MPASVDFAQVSPLCTTLCKGGFRIRTVEHLLSALEAAGVDNCRIEIENLDAQSHDAEIPIFDGSAKEWMAAVEEIGLKVATDLDGKSCEKVAPHVNEPVYVWRSDSFVAAFPSELVRITYGINFPQAPAIGCQWFSTTPLDNLVYSTQIALSRTFCIYEEVEQMRNAGLIKGGSLENAIVCSASKGWLNPPLHFSDEPCRHKILDLIGDLSLFAQFGNQGLPVAHIIAYKGGHALHADLARRLIGMM. 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05418 247 Gene3D lpxc deacetylase, domain 1 1 83 IPR015870 GO:0008759|GO:0009245
Seca10g05418 247 SUPERFAMILY Ribosomal protein S5 domain 2-like 97 244 IPR020568 -
Seca10g05418 247 Gene3D lpxc deacetylase, domain 2 94 246 IPR011334 GO:0008759|GO:0009245
Seca10g05418 247 SUPERFAMILY Ribosomal protein S5 domain 2-like 2 78 IPR020568 -
Seca10g05418 247 NCBIfam UDP-3-O-acyl-N-acetylglucosamine deacetylase 2 243 IPR004463 GO:0008759|GO:0009245
Seca10g05418 247 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 2 245 IPR004463 GO:0008759|GO:0009245
Seca10g05418 247 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 2 244 IPR004463 GO:0008759|GO:0009245
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05418 Seca-Chr10 123148604 123158135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05418 1 243 Carbohydrate Esterase AT1G25054 66.667 1.79e-121 347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05418 10 123148604 123158135 Seca10g05418 10 123148604 123158135 ECH