Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05417 ATGTCCTCACGAACCACCACGACGGAGGCGCCGGAGCCTCACGCGCCGCTCCTCCGCTCTCGCCACGACGGCGGGGGCCGGGCTCCCGCCCTTGCGCTCCTGCTCGGACGCGCCGCTGGCCGCCGCGCCCCGTCGATGCTGGTGCGTGAGACGGCGGCGCGTGAGCTCGAGGAGCGGCGCGCCGACTGGGGATACTCGAAGCCTGTGGTGGCGCTCGACATGTCGTGGAACATGGCCTTCGTGGTGGTCTCGGTGGCGATGCTGGCGTGCACCATCGACGAGCGCCCGAACACGCCGATCCGGGTCTGGATCGTCGGCTACGCGCTGCAGTGCCTCGTGCACGTGGTGCTGGTGTGGCTCGAGTATCGGCGACGGTACCGGAGGGATTTGCGGCGGCGGAGGGAGAGCGAGACCGGAAGTGCAGACGGAAGCGACAGCGACGACGGCGACGGAAGCTCGACTCGGTCCGGATTTTTGGTTTATCTGCAAAACAGATTCACAAAACGATGTGAATCAATAAATACTGGGGTTTCATTCCTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATGTACTTCTGCAAGATGCCCCGCGTTTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTTTTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCATCAGAAGCAGATCTTAGTATACTACCAAAATACAGATTTCAAATATTAAGCAATCCGGAAAAGGCTAGTGGCGGAGCTGGATCAATGGTTCCCATAGAAACTACCAGTTGTTACTTGGCAAATGAAAGAATACTTTTACCTGAGGATGCGGAATGTTGTATATGCCTCTGTTCATATGAGGATGGAGTAGAGCTCCATGCTCTTCCCTGCAACCATCATTTCCATGCTTCATGCATAGTAAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTCAAGGGAAACGAACAGGTATAG 1068 0.5449 MSSRTTTTEAPEPHAPLLRSRHDGGGRAPALALLLGRAAGRRAPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSVAMLACTIDERPNTPIRVWIVGYALQCLVHVVLVWLEYRRRYRRDLRRRRESETGSADGSDSDDGDGSSTRSGFLVYLQNRFTKRCESINTGVSFLWWMVGFYWVVSGGDVLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQILSNPEKASGGAGSMVPIETTSCYLANERILLPEDAECCICLCSYEDGVELHALPCNHHFHASCIVKWLKMNATCPLCKYNILKGNEQV. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05417 355 SMART ring_2 304 344 IPR001841 -
Seca10g05417 355 SUPERFAMILY RING/U-box 292 349 - -
Seca10g05417 355 CDD RING-H2_PA-TM-RING 303 345 - -
Seca10g05417 355 ProSiteProfiles Zinc finger RING-type profile. 304 345 IPR001841 -
Seca10g05417 355 Pfam Ring finger domain 303 345 IPR001841 -
Seca10g05417 355 MobiDBLite consensus disorder prediction 1 25 - -
Seca10g05417 355 FunFam E3 ubiquitin protein ligase RIE1 284 352 - -
Seca10g05417 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 353 IPR013083 -
Seca10g05417 355 PANTHER TARGET OF ERK KINASE MPK-1 38 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05417 Seca-Chr10 123137378 123142909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05417 6 354 C3H Transcription Factor Family AT1G68070 66.949 8.98e-176 490
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05417 10 123137378 123142909 Seca10g05417 10 123137378 123142909 ECH