Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05404 ATGACGAGCTTGATCGGTCTCATTAACAAGATCCAACGTGCTTGCACTGTCTTGGGTGACCATGGCGGTGAGGGTTTGTCCCTCTGGGAGGTTCTTCCCTCCGTCGCTGTCGTTGGAGGACAGAGTTCAGGGAAATCGTCAGTGCTGGAGAGTGTGGTGGGAAGGGATTTCCTACCACGTGGATCTGGTATTGTTACACGGAGGCCACTGGTGCTGCAACTCCACAAGATAGATGAAGGGCAACAAGAGTATGCTGAGTTTCTTCATGCACCAAGAAAAAGATTCACTGACTTTGCTGCTGTAAGGAATGAAATTTCAGATGAAACAGATCGTATAACTGGGAAGACAAAGCAAATTTCAAACATTCCAATTCACCTCAGCATATATTCTCCACATGTTGTGAACTTAACCCTCATAGACCTTCCTGGGTTGACAAAGGTTGCCGTAGAGGGACAATCAGAAACTATTGTTCAAGATATTGAGAACATGGTTCGTTCATATGTTGAGAAGCCTAGTTGCATTATATTGGCCATCTCTCCTGCAAACCAAGATATTGCTACTTCAGATGCAATAAAAATTGCAAAAGAAGTTGATCCTTCAGGTGAAAGAACATTTGGAGTGTTGACAAAGCTTGACCTTATGGATAAAGGAACTAATGCCGTTGAAGTTCTCGAAGGAAGGCAATACAGGTTGCAACATCCATGGGTTGGAATAGTTAATCGTTCACAAGCTGATATAAATAAAAACGTTGACATGATTTTTGCACGCAAGAAGGAGCGTGAATATTTTGAGACAAGCCCTGAATATGGACATTTGGCACATAAAATGGGTGCAGAATATCTTGCCAAGCTTCTATCTGAGCATTTGGAGCTTGTTATTAGGCAGCGAATACCTAGTATCATTGCCTTAATAAATAAAACCATTGACGAGCTTAATGCAGAGTTGGACCGTATTGGCAGGCCTATATCCGTGGAATCGGGGGCCCAACTATACACTATTTTAGAGATGTGTCGAGCATTTGACAAAGTATTTAAAGAACACTTGGATGGAGGATGTCCAGGTGGGGACCGAATTTATGGTGTTTTTGACAACCAATTACCAGCTGCTTTAAAAAAGCTTCCATTTGATCGCCACCTTTCCATAAAAAATGTCCAGCGGGTTGTAACAGAAGCGGATGGTTATCAGCCTCATCTGATTGCTCCAGAGCAAGGTTACAGAAGACTTATTGATGGATGTATCGGCTATTTCAAAGGCCCTGCTGATGCCTCAGTGGATGCTGTTCACCTCATATTAAAGGAACTTGTGCGGAAGTCAATTGCAGCAACTGAGGAATTGAAAAGGTTTCCAACACTTCAATCTGAGATAGCTGCAGCTGCAAATAATGCATTGGAAAGATTCAGAGACGAAAGTAGGAGGACAGTGACACGAATGGTTGATATGGAATCTAGCTATCTAACAGTGGAATTTTTTCGAAAGATTCATCTTGAACCAGAAAAGAACCCAAGTCGTAATAGTCCTAATCCAAATGTGGACAATTATACAGACAATCACCTCCGGAAAATTGATGTGAATCTTATTTCAGGATCAAATGTTAATGCATATATCAACATGATTTGTGATTCACTTAAAAATTCTATTCCAAAGGCTGTGGTTTATTGTCAAGTTAGAGAGGCAAAGAGATCCTTGCTTAACCACTTTTATGTTCAAGTTGGGAAAAAAGAGAAGGAGCAGTTGGGAGTCATTTTGGATGAAGACCCTGCACTTATGGAAAAGAGAACACAAATAGCTAAAAGGCTTGAATTATACAAGCAAGCTAGGGATGATATTGACTCTGTGGCTTGGAAATAA 1848 0.4129 MTSLIGLINKIQRACTVLGDHGGEGLSLWEVLPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKIDEGQQEYAEFLHAPRKRFTDFAAVRNEISDETDRITGKTKQISNIPIHLSIYSPHVVNLTLIDLPGLTKVAVEGQSETIVQDIENMVRSYVEKPSCIILAISPANQDIATSDAIKIAKEVDPSGERTFGVLTKLDLMDKGTNAVEVLEGRQYRLQHPWVGIVNRSQADINKNVDMIFARKKEREYFETSPEYGHLAHKMGAEYLAKLLSEHLELVIRQRIPSIIALINKTIDELNAELDRIGRPISVESGAQLYTILEMCRAFDKVFKEHLDGGCPGGDRIYGVFDNQLPAALKKLPFDRHLSIKNVQRVVTEADGYQPHLIAPEQGYRRLIDGCIGYFKGPADASVDAVHLILKELVRKSIAATEELKRFPTLQSEIAAAANNALERFRDESRRTVTRMVDMESSYLTVEFFRKIHLEPEKNPSRNSPNPNVDNYTDNHLRKIDVNLISGSNVNAYINMICDSLKNSIPKAVVYCQVREAKRSLLNHFYVQVGKKEKEQLGVILDEDPALMEKRTQIAKRLELYKQARDDIDSVAWK. 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05404 615 SMART GED_2 513 612 IPR003130 GO:0003924|GO:0005525
Seca10g05404 615 Pfam Dynamin GTPase effector domain 529 612 IPR003130 GO:0003924|GO:0005525
Seca10g05404 615 Pfam Dynamin family 35 210 IPR045063 -
Seca10g05404 615 CDD DLP_1 32 298 IPR001401 GO:0003924|GO:0005525
Seca10g05404 615 ProSiteProfiles GED domain profile. 524 615 IPR020850 -
Seca10g05404 615 FunFam Dynamin-related protein 1C 329 592 - -
Seca10g05404 615 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 29 298 IPR030381 GO:0005525
Seca10g05404 615 Pfam Dynamin central region 219 486 IPR000375 -
Seca10g05404 615 PANTHER DYNAMIN 3 612 IPR022812 -
Seca10g05404 615 SMART dynamin_3 1 249 IPR001401 GO:0003924|GO:0005525
Seca10g05404 615 FunFam dynamin-related protein 1E 1 307 - -
Seca10g05404 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 306 IPR027417 -
Seca10g05404 615 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 58 67 IPR019762 -
Seca10g05404 615 PRINTS Dynamin signature 57 74 IPR022812 -
Seca10g05404 615 PRINTS Dynamin signature 180 198 IPR022812 -
Seca10g05404 615 PRINTS Dynamin signature 222 241 IPR022812 -
Seca10g05404 615 PRINTS Dynamin signature 199 215 IPR022812 -
Seca10g05404 615 PRINTS Dynamin signature 32 50 IPR022812 -
Seca10g05404 615 PRINTS Dynamin signature 130 147 IPR022812 -
Seca10g05404 615 Gene3D - 1 307 IPR027417 -
Seca10g05404 615 Gene3D Dynamin, middle domain 325 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05404 Seca-Chr10 122835985 122848485 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05404 10 122835985 122848485 Seca10g05404 10 122835985 122848485 ECH