Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05398 ATGTGTAAGACAATTCAAATTCATGGATTCCCATATAATGTTTCTGCTGAAGAGGTAAGGAAATTTGTGGAGCAACATACAGGCATTGAAACTGTTTATGCAGTAGAGGTTGTGAAGCATAAAGATGGAGATCCTTGGACACATGTTAATGTTCAATTCACAGACAAAAAGAGTGTTGAAGCAATCTTGATTTTGGACACTCAACACCTATCTTACAGTGGCTGTGTTCTAAATGCTACAGAAATAAAACCTGACATTTTGCCAAAGCCAAGGATCTTTCCTTACAGCATGGATGATATAGTAGTACACTTTGGATGTCAAACATCCAAGGAAAAACTTAGTGTACTCTGGGAACATCCAAATGCTTCAGTTAAATTGGGGTCCAGGCTAAGAAAGATGTATATATTTTTCCATTATTTGTCTAAGAACTATAAGCTTCAGATTTCTTCTGAGAGTATATCACGTATTGAGCTACATCATTCACATGGTTTAACCAAGCGGCTTCTGCTTTTTCAGTTACGCGGAGCTCCTCAGATCTATGAAAAAGATGTTTCCAAAAGCAAATATTTTAAGGAGGCTTATGACAACCAATGGTTTCGAGGAGTAGATTTCACCCCATCATGCTGCATTGGACAATCTTCTGCTTTATGTTTTGAGCTTCCACAAACTACTGTGGTTCCAAATTTCCATCACCACTATCGTAACTATTATGAAGTTGATAACATCTTTACTCTTGAGAGACACCTTGGTTTCTTATCTAACTTGAATTTTGTCCCCATGGTGATTCCACCAGAAGGCTTCAACATACCATTCAAAATTCTGTTCAAAATCAACTCATTAGTTCAACATGGTTGTCTTCCTATGCTAGCAATTGACATCAATCTTTTTCATCTTGTTGATCCTCAACAAATAAAGATTGATTATATAGAAAGTGCCCTGCATAAGCTATATCAGATGAAGGAATGCTGCTATGAACCTGTCCAATGGTTGGAGAAACAATATCAAAGATACTCAACAAATAGTTTACTACCACTATCTAGTTCCATTTCTTTAGATGATGGGTTGGTTTATGTGCATAGAGTGCAAGTAACTCCTTCCAAAATATACTTTTGTGGTCCTGAAGTGAATCTTTCCAATCGTGTACTACGCAACTTTCCTGAAGACATTGATAACTTCCTTCGTGTTTCTTTTGTTGATGAAGACATGGATAGACTTCATTCAGCAGATTTGATCCAACCTTCATCTTCTACTGATCTGGAAAGAGAAACAAAAATCCATCAGAGGGTGTTTTCTACACTGAAAAATGGCATAGAAATTGGTGATAAGAGATTTGAGTTTCTTGCTTTCTCATCAAGTCAACTACGAGATAACTCTGTGTGGATGTTTGCATCAAGAATTGGACTTACTGCATCTGATATAAGAAAGTGGATGGGAGATTTTCATGAGATTAGGAATGTGGCCAAATATGCAGCAAGGTTGGGTCAATCATTCAGCTCTTCAAGGGAAACAGTGAGTGTTGGAAGACATGAAATTGAAGTTATTCCTGACATAGAATTGAGAAGAGGTGAAGTCAAATATTGTTTCTCTGATGGAATTGGGAAGATATCTGCTGAATTGGCTCAAGAAGTGGCCAAGAGATGTGGTTGTAAGGATCATATTCCTTCTGCATTTCAAATCAGATATGGTGGTTACAAAGGTGTTGTTGCTATTGATCCAACTTCATCAACTAAACTGTCCTTAAGAAAAAGCATGTGCAAGTACAAGTCAGAAAACACAAAATTAGATGTTCTGGCATGGAGCAAACCCAAACCTTGTTTCCTTAATCGTCAAGTAATCATCCTCTTATCCACACTCGGGGTCAAGGATCGAGTCTTTAGAGGGAAACAAAGGGAGATTGTCAATCAACTGAAAATGGTATCAAGAAAGCCATTCAAGGCAGTGGACATGATGTCCCCAGGAGAGATTACAAACATGTTAAGGGAAATGCTCATTTGTGGCTTTCATCCAACAAAGGAACCTTTTCTTTCCATGATGTTGCAAACACTATGTGCATCAAAATTACAAGAATTACAGCTCAAAACTAGGATATTTGTTAAGAAAGGAAGGGCAATGTTAGGATGCTTAGATGAAACTAGGAAATTAAATTATGGTGAGGTATTTGTGCAGATATCTCTCCCAAGAAATAAGCAATTAAATGTTAAGTCCTCTCTTTCTTCTTATGGCAATGGAGCAAACAAAAGTAAGTATATTGTTAAGGGAAAGGTAGTTGTAGCTAAAAATCCCTGTCTGCACCCAGGAGATGTGCGGATTTTGAGAGCAGTGGATGTACCTTCCCTGCATCATATGGTAGACTGTGTTGTTTTTCCACAGAAGGGGAGAAGACCACATCCTAATGAATGCTCTGGAAGTGACTTGGATGGAGATGTCTACTTTGTCAGTTGGGACCCTGGTCTTATTCCTCCTCGTCAGGAAAATCCCATGGATCATGCACCATCTCAAGTTATGAATGTGGATCATGATGTTACATTACAGGATGTTGAGGAGCATTTCACCCATTACATTGTTAAAGACAGCTTAGGAATTGTTGCAAGTGCACACACAGTCTTTGCTGATAGGGATCCTGAAAAGGCAATGAGCCCTTCATGTATTGAGCTTGCAAAGCTACACTCAGTTGCTGTTGATTTTGCGAAATCCGGTGTGCCAGCAGAAGTTCCACAACATCTACGTGTGGAACAGTATCCAGATTTCATGGAAAAACCAGACAAACCAAGTTATCAATCAAATAGCATAATAGGAAAGCTTTATCATGATGTGAAGAAAGTTGCACTACAAAAAAGCCTCACCAAGCCCTTCACTAGAAAAGCTGCAAGGCAATTATATGATCATGACATGGAGATTGATGGTTTTGAGAAGTACACAACTATTGCTTGTGAATACAAGCACATGTATGACTGCAAATTGGGGAACCTAATGGATTACTATGGTATAGAGACAGAAGCAGAAATAATCAGTGGCAATATCTTGAAAATGTCAAAATACTTCAATGAAAGAAAAGATTTGGAAGGAATTAATCATGCTGTGATGTCACTAAGGAAGGAAGCTAGGAGTTGGTTCAATGAGATGATAAGCAAGTCACATTCTCAAGGTGATGATTCCTATGCAATAGCATCTGCATGGTACCATGTTACATATCATCCTAGCTTTTGGGGATGCTACAATGAGGGGCTAAACAGGGTTCATTTCCTCAGTTTCCCATGGTGTGTACATGACACTCTTGTCAAGATAAAGAAGGAAAAAGTCAGTCATAGAACTTACAAGATGAAGCTTTGGACAATACTGAAAGTGTTTCTCACATTATTTTTTTGCTTCTTATTGTTGATAATATACAGTGCAATATCCAACACAATGAATATGTAG 3417 0.381 MCKTIQIHGFPYNVSAEEVRKFVEQHTGIETVYAVEVVKHKDGDPWTHVNVQFTDKKSVEAILILDTQHLSYSGCVLNATEIKPDILPKPRIFPYSMDDIVVHFGCQTSKEKLSVLWEHPNASVKLGSRLRKMYIFFHYLSKNYKLQISSESISRIELHHSHGLTKRLLLFQLRGAPQIYEKDVSKSKYFKEAYDNQWFRGVDFTPSCCIGQSSALCFELPQTTVVPNFHHHYRNYYEVDNIFTLERHLGFLSNLNFVPMVIPPEGFNIPFKILFKINSLVQHGCLPMLAIDINLFHLVDPQQIKIDYIESALHKLYQMKECCYEPVQWLEKQYQRYSTNSLLPLSSSISLDDGLVYVHRVQVTPSKIYFCGPEVNLSNRVLRNFPEDIDNFLRVSFVDEDMDRLHSADLIQPSSSTDLERETKIHQRVFSTLKNGIEIGDKRFEFLAFSSSQLRDNSVWMFASRIGLTASDIRKWMGDFHEIRNVAKYAARLGQSFSSSRETVSVGRHEIEVIPDIELRRGEVKYCFSDGIGKISAELAQEVAKRCGCKDHIPSAFQIRYGGYKGVVAIDPTSSTKLSLRKSMCKYKSENTKLDVLAWSKPKPCFLNRQVIILLSTLGVKDRVFRGKQREIVNQLKMVSRKPFKAVDMMSPGEITNMLREMLICGFHPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRKLNYGEVFVQISLPRNKQLNVKSSLSSYGNGANKSKYIVKGKVVVAKNPCLHPGDVRILRAVDVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDVYFVSWDPGLIPPRQENPMDHAPSQVMNVDHDVTLQDVEEHFTHYIVKDSLGIVASAHTVFADRDPEKAMSPSCIELAKLHSVAVDFAKSGVPAEVPQHLRVEQYPDFMEKPDKPSYQSNSIIGKLYHDVKKVALQKSLTKPFTRKAARQLYDHDMEIDGFEKYTTIACEYKHMYDCKLGNLMDYYGIETEAEIISGNILKMSKYFNERKDLEGINHAVMSLRKEARSWFNEMISKSHSQGDDSYAIASAWYHVTYHPSFWGCYNEGLNRVHFLSFPWCVHDTLVKIKKEKVSHRTYKMKLWTILKVFLTLFFCFLLLIIYSAISNTMNM. 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05398 1138 Pfam RNA dependent RNA polymerase 363 938 IPR007855 GO:0003968
Seca10g05398 1138 SUPERFAMILY RNA-binding domain, RBD 3 79 IPR035979 GO:0003676
Seca10g05398 1138 Gene3D - 2 81 IPR012677 -
Seca10g05398 1138 PANTHER RNA-DEPENDENT RNA POLYMERASE 3 1102 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05398 Seca-Chr10 122718534 122726049 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05398 10 122718534 122726049 Seca10g05398 10 122718534 122726049 ECH