Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05396 ATGGGTAAAACAATTGAGTTGTATGGATTCCCTTCTCAAGTAAACGTGTCTACTGTGAAGATATTTGTAGAGCGCTATACTGGTGAAGGAACTGTGTTTGCTATTAAGCTAAGACAAGGAAAAGGTCGGGTTCCAAGAGCATTTGCTATTATTCAATTCACATCTGCAAAATGTGCTGCATCTATTATGTCTTTAGTTAACACATTGCGGTATGGGACCTCATATCTAAAAGTCCGGGAAGTAGAAAGAGATATTGTGTCAAAGCCAAGAAACTTTCTTCATCGTTTGGATGATGTGAAACTGTATTTTGGCTGTCAGATCTCGAAAGGAAGGTTCTCTGTTTTATGGAAAACAGTGAATGTTAGTGTAGATTTTGGGATTGGAATGAGAAAGTGGCATTTCATTTTGTCCTATGACAGTAAGAAATACAAACTTGAGCTTTCATATGAGAACATTTGGAAGATTGAGCTGCATCGACCACATGGTGAAACTGCAAATTATCTCCTGATTCAGTTACTTGGTGCTCCTCGGATTTTCGAGTATGATACCCCTACTTCAGTAAATGTATATGAAGATCCTTCAATGAACTATTATAAAGATACCCCTGATGATCAATGGATCCGAGCAATCGATTTCTCTCCTTCCTGTTGTATTGGGCAGTCTTCTGCTTTATGTCTTGAGCTTCCTTATGGTCAACATTTTCCAGATTTCAGGGAAAATTTTGCATATTATGAGGAAAGTGAGAGGAGATACACGTTAGAGACAAGACTTCCTTTTTCTGTCAACAATCTGGGTCTTGTTCCCATTGTTGCTCCTCCTCTAGGCTTGGAAATACCATATGACATCTTGTTTAAAGTTAATTCATTGGTTCAACATGGGTGTCTTGCAGGTCCTGCACTTGATAATAACTTCTATTGTTTGGTTGATCCATGTAGAATGGACCGTGAATTTATTGAACATGCTTTAGAAAAAATGTACCATTCAAAGGATTTCTGTTATGAACCCACCAAGTGGCTGATTGATCAGTATAAAAGGTACCTTGAACCAAAGAATCGTCCTCGATCACCTGTGATATCCTTGGATGCGGGGTTGGTATACGTTCGCAGGGTTCAAATTACACCTTGCAAAGTATATTTTTGTGGTCCAGAGATTAATGTCTCAAATCGTGTTCTTCGCCATTTCAGTGAACATATTGATAACTTTCTACGTGTTTCATTTGTTGATGAGGAGTTGGATAAACTGTATTCAACAGATTTATCTTCACGTACATCTGAGGGCAGGAAAACTGAGATATACAAAAGAATTCTTTCCATCCTTGGAAATGGTATAGTTATTGGTGATAAGAAGTTTGAATTTCTAGCATTCTCATCAAGTCAGTTGCGGGAAAACTCTCTCTGGATGTTTGCTCCTACAACAACTGGATGTACTGCAGCTTACATAAGGGAATGGATGGGAGATTTTCGCCGTATAAGAAATGTGGCTAAATATGCTGCTAGGCTGGGACAATCTTTTGGTTCATCTACTGAAACTCTAAGTGTCAACAGGGATGAAGTTGAAATTATTCCTGATGTGAAGGTTAAGAATGGTAAAACAGAGTATGTCTTCTCTGATGGAATTGGGAAAATATCTCTTGAATTTGCCAGGAGAGTGGCCAAAAAATGTGGTTATAATTCCACTCCATCGGCCTTTCAGATCCGGTATGGTGGGTACAAAGGAGTTGTGGCTGTTGACCCAAGATCATCTGCAAAGCTATCATTGAGGAAGAGCATGCACAAGTATGATTCAGATAACACAAAATTGGATGTTTTGGCATGTAGTAAGTTTCAGCCTTGTTATCTGAACAGGCAGTTGATTACTCTCTTATCCACTCTTGGTGTCAAGGACCATGTTTTTGAGAAAAAGCAAAAAGAAGCTGTTAATCAACTGAACACTATACTAACAGATTCATTAAAGGCACAAGAGGTTTTGGACTTAATGTCTGCCGGGGAGATCACTAATATTCTGAAGGAGATGCTCATTTGTGGCTACAAGCCTAATGTTGAACCATTTCTTTCAATGATGCTGCAGACGTTTAGGGCATCAAAACTGTTGGAACTGCGACAAAAATCTAGGATCTTTATTCCAAATGGAAGAGCAATGATGGGATGTCTAGATGAAACTAGAACCCTGGAATATGGTCAAGTATTTGTTCAGTTTTCTAACAACAGGCTTGGGAATCTTTCTGATGATTTGTTTTCATATGGTTCAGCAAAATCTTATAGAGTTACGGGTAAGGTAGTAGTAGCCAAAAACCCTTGCTTGCACCCAGGTGATGTGCGTGTTTTGAAGGCTGTGGATGTGCCAGCTTTACACCACATGGTGGATTGTGTTGTCTTCCCTCAAAAAGGGTACAGACCTCATCCAAATGAATGCTCGGGAAGTGATCTGGATGGAGACATCTACTTTGTTTGTTGGGACCATGATTTGATTCCATCTAGGACAGAACAGCCAATGGACTATGTTGCTGCCCCAAATATTGATTTAGGTCATGATGTGATGATTGAGGAGGTGGAGGAGTATTTTACCAATTACATCCTTAATGACAGTCTGGGAATAATTGCCAATGCACACACTGTCTTTGCAGATAGAGAACCTTTAAAAGCAATGGGTGAACCATGCATTGAGCTTGCAAAGCTATTCTCAATAGCAGTTGACTTTCCAAAAACTGGTGACCCAGCTGTTATACCTCCTAATCTTTATGTCAAAGAATATCCAGACTTCATGGAGAAGCCTGACAAACCCACCTATGAATCGCCTAATGTTATAGGAAAGCTTTTTAGGGAAGTGCAAGGAATTTCAGAAGGTGCTGGCTCTATTACATCCTTCACCCGGGAAGTGGCTAGACAGTCATATGACCCTGACATGGAGGTTGATGGCTTTATGGATTATGTTGATGATGCTTTCTATCACAAAACCAACTATGACTACAAGTTGGGAAATCTGATGGACTACTATGGGATCAAAACTGAAGCTGAAATCCTTAGTGGGAATATCATGAAAATGTCAAAATCTTTCACCAAAAGAAGGGATGCAGAAGCAATTAATATGGCTGTAAGGTCCCTAAGGAAAGAGGCTAGGACCTGGTTCAATGATAGTAGTAGTAGTAGTGGTGGTGGTGTAGATTTTGGGAGTGATGATGCATATGCAAAAGCTTCTGCTTGGTACTATGTTACTTACCATCCAAGTTTCTGGGGTTCCTACAATGAAGGTATGGAAAGGGACCATTATCTTAGCTTTGCATGGTGTGTTTACCCTCAGCTTGTTCAAATCAAGAAGGAGAAAACCAGGATGAGAATGTATACTGAGCAATCCTTGGACCAATTTTTCACTCGTGGGTTGCGTTTGAATTGA 3390 0.3976 MGKTIELYGFPSQVNVSTVKIFVERYTGEGTVFAIKLRQGKGRVPRAFAIIQFTSAKCAASIMSLVNTLRYGTSYLKVREVERDIVSKPRNFLHRLDDVKLYFGCQISKGRFSVLWKTVNVSVDFGIGMRKWHFILSYDSKKYKLELSYENIWKIELHRPHGETANYLLIQLLGAPRIFEYDTPTSVNVYEDPSMNYYKDTPDDQWIRAIDFSPSCCIGQSSALCLELPYGQHFPDFRENFAYYEESERRYTLETRLPFSVNNLGLVPIVAPPLGLEIPYDILFKVNSLVQHGCLAGPALDNNFYCLVDPCRMDREFIEHALEKMYHSKDFCYEPTKWLIDQYKRYLEPKNRPRSPVISLDAGLVYVRRVQITPCKVYFCGPEINVSNRVLRHFSEHIDNFLRVSFVDEELDKLYSTDLSSRTSEGRKTEIYKRILSILGNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTAAYIREWMGDFRRIRNVAKYAARLGQSFGSSTETLSVNRDEVEIIPDVKVKNGKTEYVFSDGIGKISLEFARRVAKKCGYNSTPSAFQIRYGGYKGVVAVDPRSSAKLSLRKSMHKYDSDNTKLDVLACSKFQPCYLNRQLITLLSTLGVKDHVFEKKQKEAVNQLNTILTDSLKAQEVLDLMSAGEITNILKEMLICGYKPNVEPFLSMMLQTFRASKLLELRQKSRIFIPNGRAMMGCLDETRTLEYGQVFVQFSNNRLGNLSDDLFSYGSAKSYRVTGKVVVAKNPCLHPGDVRVLKAVDVPALHHMVDCVVFPQKGYRPHPNECSGSDLDGDIYFVCWDHDLIPSRTEQPMDYVAAPNIDLGHDVMIEEVEEYFTNYILNDSLGIIANAHTVFADREPLKAMGEPCIELAKLFSIAVDFPKTGDPAVIPPNLYVKEYPDFMEKPDKPTYESPNVIGKLFREVQGISEGAGSITSFTREVARQSYDPDMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILSGNIMKMSKSFTKRRDAEAINMAVRSLRKEARTWFNDSSSSSGGGVDFGSDDAYAKASAWYYVTYHPSFWGSYNEGMERDHYLSFAWCVYPQLVQIKKEKTRMRMYTEQSLDQFFTRGLRLN. 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05396 1129 PANTHER RNA-DEPENDENT RNA POLYMERASE 3 1107 IPR007855 GO:0003968
Seca10g05396 1129 Pfam RNA dependent RNA polymerase 372 942 IPR007855 GO:0003968
Seca10g05396 1129 CDD RRM_SF 5 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05396 Seca-Chr10 122652043 122663608 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05396 10 122652043 122663608 Seca10g05396 10 122652043 122663608 ECH