Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05388 ATGGTGTCAAGGTCCTATTCAAATCTATTAGAGCTGGCCTCTGGTGAGGCTCCATCATTTGGGATCATGAATAGGCGAATTCCAAGGATTATGACTGTGGCTGGGTTGATATCTGATGTTGATGATGATCCAGCTGAGAGTGTGTGTTCTGATCCATCTTCTTCATCAGTACACCGTGACCGGATCATAATAGTGGCTAATCAGCTCCCTATAAGGGCTCAGAGGAAGCCAGATGGCAATAGGAATTGGTCTTTTGAGTGGGAGGAAAATTCACTTCTTCAATTGAAAGATGGATTGGGAGATGATGATATTGAAGTTATTTATGTTGGATGCCTTAAGGAAGATGTGCATCCAAATGATCAAGATGAGGTTTCACAGATACTTCTTGAGACCTACAAGTGTGTCCCAACTTTTCTCCCACCTGATCAGTTTACTAGGTACTATCATGGCTTTTGCAAACAACAATTGTGGCCACTGTTTCATTACATGCTTCCTTTGTCACCAGAACATGGTGGTAGGTTCAATAGGTCACTGTGGCAAGCTTATGTCTCAGTCAACAAAATTTTTGCAGATAGGATTATGGAAGTCATTAACCCTGAAGATGATTTTGTCTGGATACATGATTATCATTTGATGGTGTTACCAACTTTCTTGAGGAAGAGATTTAACAGAGTCAAACTTGGATTCTTCCTCCATAGTCCATTCCCTTCATCAGAAATATATAAAACATTGCCTGTTAGGGAAGAGCTCTTGAGAGCACTCCTTAATTCGGATTTGATTGGGTTCCATACCTTTGATTATGCGCGACATTTCCTCTCCTGTTGTAGTCGGATGCTTGGTCTCACTTATGAATCGAAGCGAGGTTATATCGGGCTTGAGTATTATGGTAGGACTGTTAGTATCAAAATTCTTCCTATTGGTATACATATGGGTCAGCTTCAATCAGTTCTAAGGCTGCCAGAGACTGAAGATAAAGTTTGTGAGCTCATTAAACAGTTTTCTGATCAAGGCAGGACAATGCTGCTTGGGGTGGATGACATGGATATTTTCAAGGGAATAAGTTTGAAGCTATTGGCCATGGAGCAGCTTCTCATTCAGAATCCTGAGTATCAGGGAAAGGTAGTACTGGTCCAGATAGCTAATCCTGCCAGGGGAAAAGGGAAAGATGTGAAAGAGGTGCAAGCTGAGACAAAGGCCACCGTGAAACGGATTAATGAAACATTTGGGAAACCCGGGTATGATCCTGTTATTCTGATTGATGAGCCACTCAAGTTTTATGAGAGAGTTGCTTACTATGTTGTTGCCGAGTGTTGTTTAGTCACTGCTGTAAGGGATGGAATGAATCTCATACCATATGAATATATAATCAGTCGTCAAGGAAATGAAACATTGGATAATGTTTTAGGGCTAGTGTCCTCCCCTAAGAAGAAAAGCATGTTAGTTGTGTCTGAGTTCATTGGCTGTTCCCCATCTTTAAGTGGAGCAATCAGAGTGAACCCGTGGAATATTGATGCGGTCGCAGAAGCGATGGACTCTGCCCTGGAAATGGCTGATTCAGAGAAACAGCTTAGGCATGAAAAGCATTATAGATATGTTAGTACTCATGATGTTGGGTACTGGGCTCGGAGCTTCTTACAAGATTTGGAAAGGAGTTGTAGTGATCATGTACGGCGAAGGTGGTGGGGAATTGGGTTTGGATTGAGTTTTAGAGTTGTAGCACTTGATCCAAACTTTAGGAAGCTCTCAATGGAACACATTGTTTCAGCTTATAAACGGACAACAACTCGAGCAATCCTTCTAGACTATGATGGTACACTAATGCCTCAGGCTTCTATTGATAAGAGCCCGACTAGTAAATCCATTGAAATTCTTAATACTTTGTGTAGAGATAAGAACAACATGGTGTTTCTTGTTAGTGCTAGAAGCCCAAAGGACCTCTCTGAATGGTTTTCTCCTTGTGAGAATCTGGGAGTTGCAGCTGAGCATGGTTACTTTATAAGAATGAAGCGAGATGCAGAATGGGAAACCTGTGTTCCTGCAACAGATTGTAGTTGGAAACAAATTGCAGAGCCTGTTATGAAACTTTATACTGAAACAACTGATGGATCCACCATTGAAGATAAGGAGACCGCACTTGTTTGGTGCTATGAGGATGCAGATCCTGATTTTGGATCATGCCAAGCTAAGGAACTTCTTGATCATCTTGAGAGTGTGCTGGCAAATGAACCTGTAACAGTCAAAAGTGGCCAGAGTAATGTAGAGGTCAAACCACAGGGTGTGAGCAAGGGACTAGTGGCCAAACGCCTACTTTCTTCCATGGAAGAAAAGGGAATGTCACCTGATTTTGTTTTGTGCATAGGAGATGACAGGTCTGATGAAGACATGTTTGAGGTAATTACCAGTTCAATGGCCGGTCCGATTGCACCAAGGGCTGAAGTATTTGCATGCACGGTTTGTCGAAAACCCAGTAAGGCAAAGTACTATCTAGATGATACAGCTGAAATAGTGAGATTGATGCAGGGTTTAGCCTCTGTTTCAGAACAGAAAGTTTCATGTTAA 2559 0.4197 MVSRSYSNLLELASGEAPSFGIMNRRIPRIMTVAGLISDVDDDPAESVCSDPSSSSVHRDRIIIVANQLPIRAQRKPDGNRNWSFEWEENSLLQLKDGLGDDDIEVIYVGCLKEDVHPNDQDEVSQILLETYKCVPTFLPPDQFTRYYHGFCKQQLWPLFHYMLPLSPEHGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPVREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPIGIHMGQLQSVLRLPETEDKVCELIKQFSDQGRTMLLGVDDMDIFKGISLKLLAMEQLLIQNPEYQGKVVLVQIANPARGKGKDVKEVQAETKATVKRINETFGKPGYDPVILIDEPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNETLDNVLGLVSSPKKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALEMADSEKQLRHEKHYRYVSTHDVGYWARSFLQDLERSCSDHVRRRWWGIGFGLSFRVVALDPNFRKLSMEHIVSAYKRTTTRAILLDYDGTLMPQASIDKSPTSKSIEILNTLCRDKNNMVFLVSARSPKDLSEWFSPCENLGVAAEHGYFIRMKRDAEWETCVPATDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQSNVEVKPQGVSKGLVAKRLLSSMEEKGMSPDFVLCIGDDRSDEDMFEVITSSMAGPIAPRAEVFACTVCRKPSKAKYYLDDTAEIVRLMQGLASVSEQKVSC. 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05388 852 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 725 852 - -
Seca10g05388 852 CDD GT20_TPS 61 549 IPR001830 GO:0003824|GO:0005992
Seca10g05388 852 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 314 - -
Seca10g05388 852 NCBIfam HAD-IIB family hydrolase 598 799 IPR006379 -
Seca10g05388 852 NCBIfam trehalose-phosphatase 595 842 IPR003337 GO:0003824|GO:0005992
Seca10g05388 852 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 843 IPR001830 GO:0003824|GO:0005992
Seca10g05388 852 Pfam Trehalose-phosphatase 599 832 IPR003337 GO:0003824|GO:0005992
Seca10g05388 852 FunFam Alpha,alpha-trehalose-phosphate synthase 316 533 - -
Seca10g05388 852 CDD HAD_TPP 597 837 - -
Seca10g05388 852 Gene3D - 595 727 IPR023214 -
Seca10g05388 852 Gene3D - 728 851 IPR023214 -
Seca10g05388 852 Pfam Glycosyltransferase family 20 61 549 IPR001830 GO:0003824|GO:0005992
Seca10g05388 852 Gene3D Glycogen Phosphorylase B; 53 314 - -
Seca10g05388 852 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 551 - -
Seca10g05388 852 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 595 712 - -
Seca10g05388 852 SUPERFAMILY HAD-like 596 842 IPR036412 -
Seca10g05388 852 Gene3D Glycogen Phosphorylase B; 315 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05388 Seca-Chr10 122525890 122529515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05388 1 848 Trehalose Biosynthesis Gene Families AT1G68020 81.460 0.0 1463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05388 10 122525890 122529515 Seca10g05388 10 122525890 122529515 ECH