Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05387 ATGTGCATAAGACAGAGAAGGATGGAGGGTAACAAAATTGGAGAAAATGGAAGGAGAAAGGAGGCTGAGGGAAGTGATGCAGAGAAACAAGATGAAGAGGTTTTAAAGAAGATTATTGCAAGCCATCCTTTGTATGAAGTGTTGATTGAATCTCACATCAACTGCTTGAAGGTTGGATCTGAGGAAGCTGAAGAGTTTGATATAACAAATGATGCATGGAAAAAGCTGGTCAACTCAAAGTTCAAATCAACTACTAATCCAAACACTTCTGAGCTTGATCACTTCATGGAAGCATATTGCATGGCACTGAGCAAGCTGAAAGAAGCAATAGAGGAACCAACAAAAGAAGCAAAAGCTTTCATCAATGCGACGTATGCTCAACTGAAGGAACTCAATGAAGCAAATAATCCACAACATTTGATAATTAAGCAACAAGAACCTTGA 444 0.3874 MCIRQRRMEGNKIGENGRRKEAEGSDAEKQDEEVLKKIIASHPLYEVLIESHINCLKVGSEEAEEFDITNDAWKKLVNSKFKSTTNPNTSELDHFMEAYCMALSKLKEAIEEPTKEAKAFINATYAQLKELNEANNPQHLIIKQQEP. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05387 147 SMART KNOX1_2 33 72 IPR005540 GO:0003677|GO:0005634
Seca10g05387 147 SMART KNOX2_2 82 133 IPR005541 GO:0003677|GO:0005634
Seca10g05387 147 Pfam KNOX2 domain 90 131 IPR005541 GO:0003677|GO:0005634
Seca10g05387 147 Pfam KNOX1 domain 35 59 IPR005540 GO:0003677|GO:0005634
Seca10g05387 147 MobiDBLite consensus disorder prediction 1 30 - -
Seca10g05387 147 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 8 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05387 Seca-Chr10 122439538 122441453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05387 31 141 Homeobox Transcription Factor Family AT4G08150 33.043 5.28e-12 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05387 10 122439538 122441453 Seca10g05387 10 122439538 122441453 ECH