Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05386 ATGACAATCAGATCAACAAGTTCGAAGCGGAAGCTTCACTCCGAACCACCATCGCACATTATTAGCAAGAAGCTCCGGTCGAAGCTGCCTCGCCGGCGAAGAAGCCAGATCTCGCCGGTGCTTCTTACTTCGCCTATGTTCAAAGTTTCCGTCGAGAATCGTCGTTTATCCGTCGTTTCAGTGGACTCGAGCTCTGGCTCTGACCTGGCCGGCGGTGAAGCTTCGTGCAATTCGAGCAGAGCTTCCACCGTATTCGCTCGCATGGGAAGGTCAAACTTGAGGAACGAGTTATCAGAAGAATTTGAAGGTGTTCGGAAGGCTGAGTGTGTGGATTTCTTGAGAAATCAGAGATTTCAGAAGCGGAGTGAAAATGAACAGGAGGTATCACAGTCTTCGTGTGTGGACTCCAATTCTGGCGTTCAAGAACGCAGCAGAAGCTTAATTTTGAAGTTCAGAAGCGGAAAAGACAGTAAGAATCCGAAAGAAAATGACGAAGTTTCGGAAGCTTGCACGAAATCGGAGATTACATTCCCAGAGCAATTTTCCGTTGATAATTCAAAGTCCGGACAAGGAAATTTGAAAATCTCGTCGGAGATAACTCGAAACGACGTCGTTGCAGTTAGCTCTGGTGTTCGAAACACGTCGTTTGAAGAGGAAAAGACCAAATGCAGGGAAAACAGAGCAGCGGAATCCGAATTCTCTCAAGGTTCAAGGAACCACGGCAACTGCGCGGATTTGATTGCGCAATCGATGACAAATCATGGTTCGGATAATTCCGGCGCCGATTCCGATCTCGCTTGCAGTGAGCAATTGCTATTCTTGTACTGCGACGAAGACGACGAGTCAGAGTACTACTCCAGCCAGGGAACTGTGTTCTCTGACCTTCACTCCGAGATTTTCGGCGAATGCTCAGAGCTAGAGCTTTCAGATTATACTCCGTCTCTGTTTGTTGATTCTGGAAGCCAGTTTTCGCAAGGATCAGTTGGAGAAAATCCTTCGCCAACTTACTTACAGTTCCTTCAGTACCGCAAGGAATTCTCGACGCTAGCTTGTCCAGTTAATGCTTCAACCATAGAAGAAGATGTTTCTCTTCACTTCAAAAGGTTCGAAGATTTGGATGACGAAGACAGCTACCAGATGCTAAGGAAGAGGGAAAGAAGGCAAGTTTTCCTGTGGAATTATGCTGAACGGTATTTCTCTACCACGGATTTCGGCGAGCTCGTGCTTCAACAACGCTCGCAAATGGTTCAGTGGATCGTTGAGCAATCTTGCCGAAAACAGCTTCGGCAAGAGACGTTGTTTCTTGGAATCAGCCTACTTGACCGTTTCCTGAGCAAAGGATACTTCAAAGCCAGACGAAACCTTCATATTGTTGGAATAGCCTGCCTCACGTTAGCCACAAGGATCGAAGAAAACCAGCCATATAACAGAGTGGGGCAAAAGTATTTCTACATAGGAAGCAGTGTGTACAGTAGATGCGAGGTGGTAGCTATGGAATGGATGGTGCAGGAGGTGCTCGAGTTCCAGTGTTTTCTGCCTACCATCTACAACTTCTTGTGGTTCTACCTAAAAGCTGCCAATGCTGATGCAGATGTGGAGAAGAGGGTCAAGTACCTAGCAGTACTGGCTCTGTCGGCTCATGAACAACTGTGCTACTGGCCCTCAACGGTTGCTGCTGCACTTGTAATATTGGCTTGTCTAGAACTCAATCAAAACGCATTCCACAAAGTCATAGGGATCCACGTTAGATCAAAGGATGAGAATTTGCATGCATGCATAGAGAGTCTGGAATGGTTATTACGCTATCTATGA 1812 0.4674 MTIRSTSSKRKLHSEPPSHIISKKLRSKLPRRRRSQISPVLLTSPMFKVSVENRRLSVVSVDSSSGSDLAGGEASCNSSRASTVFARMGRSNLRNELSEEFEGVRKAECVDFLRNQRFQKRSENEQEVSQSSCVDSNSGVQERSRSLILKFRSGKDSKNPKENDEVSEACTKSEITFPEQFSVDNSKSGQGNLKISSEITRNDVVAVSSGVRNTSFEEEKTKCRENRAAESEFSQGSRNHGNCADLIAQSMTNHGSDNSGADSDLACSEQLLFLYCDEDDESEYYSSQGTVFSDLHSEIFGECSELELSDYTPSLFVDSGSQFSQGSVGENPSPTYLQFLQYRKEFSTLACPVNASTIEEDVSLHFKRFEDLDDEDSYQMLRKRERRQVFLWNYAERYFSTTDFGELVLQQRSQMVQWIVEQSCRKQLRQETLFLGISLLDRFLSKGYFKARRNLHIVGIACLTLATRIEENQPYNRVGQKYFYIGSSVYSRCEVVAMEWMVQEVLEFQCFLPTIYNFLWFYLKAANADADVEKRVKYLAVLALSAHEQLCYWPSTVAAALVILACLELNQNAFHKVIGIHVRSKDENLHACIESLEWLLRYL. 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05386 603 Gene3D - 505 603 - -
Seca10g05386 603 MobiDBLite consensus disorder prediction 125 139 - -
Seca10g05386 603 PANTHER CYCLINS 351 595 IPR039361 -
Seca10g05386 603 Pfam Cyclin, N-terminal domain 406 509 IPR006671 -
Seca10g05386 603 Pfam Cyclin, C-terminal domain 513 597 IPR004367 -
Seca10g05386 603 SUPERFAMILY Cyclin-like 513 600 IPR036915 -
Seca10g05386 603 MobiDBLite consensus disorder prediction 120 139 - -
Seca10g05386 603 SUPERFAMILY Cyclin-like 372 509 IPR036915 -
Seca10g05386 603 CDD CYCLIN_SDS-like_rpt2 513 600 - -
Seca10g05386 603 ProSitePatterns Cyclins signature. 412 443 IPR006671 -
Seca10g05386 603 SMART cyclin_7 417 504 IPR013763 -
Seca10g05386 603 PIRSF Cyclin_A_B_D_E 54 272 IPR046965 GO:0016538|GO:0044772
Seca10g05386 603 PIRSF Cyclin_A_B_D_E 374 601 IPR046965 GO:0016538|GO:0044772
Seca10g05386 603 Gene3D - 400 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05386 Seca-Chr10 122393357 122399652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05386 376 572 Core Cell Cycle Gene Families AT5G11300 32.178 6.63e-21 93.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05386 10 122393357 122399652 Seca10g05386 10 122393357 122399652 ECH