Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05373 ATGGGTCTTAGTTTGAAGATGCAGAGCCACCATCCTGTGGCTTTCAGGTTGCATGATCAAACTGGGTCTAAAAGAAAGTATACTTTCATTCAGGCCCATAGAGCTTGGCTACCAAAGTTTTTGCTGCTTTGGATCCTTCTAATGGCTTTAATCAGTTGGTGCATCTATAGTAAAATGGATGATGACACTAAAGTTAGAAGGAAAGAGGTGTTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGTTGCAAGATCAATTTAGTGTTAGTGTCAACCATGTCCATGCTCTTGCCATCCTTGTTTCCACCTTCCATTACTACAGAACCCCTTCTGCCATTGACCAGGAAACCTTTGCTGAGTATACAGCCAGGACAGCATTTGAGCGGCCATTGCTGAGTGGTGTGGCCTATGCACAAAGAGTTGTTAACTCAGAGAGAGAGAGATTTGAGAAACAACATGGATGGGTTATAAAGACAATGGAGAGAGAGTCTTCACTGGTTAGAGATGAGTATGCACCTGTGATATTTGCTCAAGAAACTGTCTCATACCTTGAGTCTCTTGATATGATGTCTGGGGAGGAGGACAGAGAAAACATTTTAAGGGCTAGGGCCACTGGGAAAGCTGTTCTGACTAGTCCTTTCAGGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTCCCTGTGTATAAGTCTAAGCTCCCTCTGAAGCCAACAGTGGAAGAACGCATTGAAGCAACTGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTTGGGCAATTAGCTGGTCACCAAGCAATTTTGGTGAATGTGTATGATATCACAAACTATAGTAATCCCCTAATCATGTATGGCAACCAATATGAAGAAGGTGATATGTCTCTGGCCCATGAAAGCAAGCTTGATTTTGGAGATCCATACAGGAAACATAAGATGATATGTAGGTATCACCAGAAGGCACCAACAAATTGGATAGCTCTTACCACAGCATTCCTATTCTTTGTGATTCTTCTATTAGTGGGTTACATTTTGTATGGTGCTGGAAATCATATTGTCAAAGTTGAAGATGATTTCCATGAAATGCAGGAATTAAAAGTCCGAGCAGAAGCTGCTGATGTTGCCAAATCCCAGTTTCTAGCTACAGTCTCTCATGAAATTAGAACACCCATGAATGGCATTTTAGGAATGCTTGCTCTGCTTCTAGATACAGAATTGAGTTCAACCCAACGAGATTATGCTCAGACTGCTCAAGCGTGTGGAAAGGCACTGATAACATTGATAAATGAGGTGCTTGACCGAGCTAAAATAGAAGCTGGCAAGTTAGAGCTAGAGGCTGTTCCATTTGACCTTCGTTCAATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAGTCCAGACACAAAGGACTGGAGTTGGCTGTGTTTGTTTCTGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAATAACAAATCTTGTTGGCAACTCTGTTAAATTTACAGAACAAGGACATATATTTGTTAAAGTCCATCTAGCAGATAATAGGAAGTCCATAATGAATGGAAAACATGATGCTATTTTTAATGGAGAATCAGATGAAGTTTTCCATATATTTGGGGATCATCATTTCAAAACCTTAAGTGGATGTGAAGCAGCTGATGAACGGAACAGCTGGGATAATTTTAAGCATCTAATTGCTGATGAAGAACATTGCTTTGATTCTTCACGTAAAATGACTGCCACTTTTGAATCTTCAGAGCAAGTCACCTTGAGGGTCTGTGTCGAGGACACTGGAATTGGAATTCCTTTCTCAGCCCAGGATAGGATATTTATGCCTTTTGTGCAGGCTGACAGCTCAACCTCTCGAAATTATGGTGGTACTGGTATTGGCTTGAGTATCAGTAAATGCCTGGTTGAACTAATGGGTGGTCAGATAAACTTCATAAGCCGGCCCCAGGTTGGGAGCACGTTTTCATTTACTGCAGTCTTTGGAATGTTTAAGAAAAATTTGGTTAATGACATGAAGAAACTAAATTTGGAAGATCTTCCTTCTAGTTTTAGAGGCTTGAAAGCCATAGTGGTTGATGGAAAACCAGTGAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTAGGGATAGTAGTTAAAGTTGCAAATAGCATCAGTAAGGCTGTGGCTTTCTGTGGAAAAAATGGTTCTTTGACACCAGGAATGTTCCAGCCTGATATTATCATGGTTGAGAAGGACACATGGATATCTGGAGAGGATGGGGGTTTCAATGTATGGAAACTGGACTTGAAGCTGAATGGGCATATGTTTAAGATGCCTAAAATGATCCTTCTTGCAACCAATATGAATAATCATGAATTTGATAGAGCTAAGGCCGCAGGTTTTACTGATACCGTGATCATGAAGCCTCTGAGAGCTAGTATGGTGGCTGCTTGTCTTCAGCAAGTTCTGGGGATGGGGAAGAAGAGGCAGCTAGGGAAAGACATGCCTAATGGTTCTACGTTCCTACAAAGCCTTCTCTATGGAAAGAAAATCTTGGTGGTTGATGACAATGGGGTAAACAGGAGGGTTGCTGCAGGTGCATTAAAGAAGTTTGGAGCTGATGTGAAGTGTGCTGAAAGTGGCAAAGCTGCACTTGAAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGACATTCAAATGCCAGAAATGGACGGGTATGCATGTTTGCACAGATTTGAAGCAACTAGTAGAATTCGAATGATGGAGAGAAAGGCAAATGAGGAGATGAATGGTGAAGGAAAGAAAAGTGAGTGGCATGTACCTATATTGGCCATGACAGCTGATGTAATACATGCTACATATGATGAATGCTTGAAATGTGGTATGGATGGATATGTCTCAAAACCATTTGAGGAAGAGAATCTCTATCAGGAAGTTGCAAAGTTTTTCAAATCCAAGCCCATCTCAGACTCATGA 3015 0.4129 MGLSLKMQSHHPVAFRLHDQTGSKRKYTFIQAHRAWLPKFLLLWILLMALISWCIYSKMDDDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERERFEKQHGWVIKTMERESSLVRDEYAPVIFAQETVSYLESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPLKPTVEERIEATAGYVGGSFDVESLVENLLGQLAGHQAILVNVYDITNYSNPLIMYGNQYEEGDMSLAHESKLDFGDPYRKHKMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLADNRKSIMNGKHDAIFNGESDEVFHIFGDHHFKTLSGCEAADERNSWDNFKHLIADEEHCFDSSRKMTATFESSEQVTLRVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTAVFGMFKKNLVNDMKKLNLEDLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGIVVKVANSISKAVAFCGKNGSLTPGMFQPDIIMVEKDTWISGEDGGFNVWKLDLKLNGHMFKMPKMILLATNMNNHEFDRAKAAGFTDTVIMKPLRASMVAACLQQVLGMGKKRQLGKDMPNGSTFLQSLLYGKKILVVDDNGVNRRVAAGALKKFGADVKCAESGKAALEMLQLPHNFDACFMDIQMPEMDGYACLHRFEATSRIRMMERKANEEMNGEGKKSEWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQEVAKFFKSKPISDS. 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05373 1004 SMART REC_2 859 992 IPR001789 GO:0000160
Seca10g05373 1004 CDD REC_hyHK_CKI1_RcsC-like 861 992 - -
Seca10g05373 1004 Gene3D CHASE domain 112 327 IPR042240 -
Seca10g05373 1004 SMART CHASE_2 108 293 IPR006189 -
Seca10g05373 1004 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 493 674 IPR003594 -
Seca10g05373 1004 ProSiteProfiles Histidine kinase domain profile. 388 678 IPR005467 -
Seca10g05373 1004 Gene3D - 697 837 - -
Seca10g05373 1004 Gene3D - 854 1002 - -
Seca10g05373 1004 SUPERFAMILY CheY-like 858 997 IPR011006 -
Seca10g05373 1004 PRINTS Bacterial sensor protein C-terminal signature 662 675 IPR004358 GO:0016310|GO:0016772
Seca10g05373 1004 PRINTS Bacterial sensor protein C-terminal signature 621 631 IPR004358 GO:0016310|GO:0016772
Seca10g05373 1004 PRINTS Bacterial sensor protein C-terminal signature 638 656 IPR004358 GO:0016310|GO:0016772
Seca10g05373 1004 PRINTS Bacterial sensor protein C-terminal signature 603 617 IPR004358 GO:0016310|GO:0016772
Seca10g05373 1004 SMART HKATPase_4 493 678 IPR003594 -
Seca10g05373 1004 ProSiteProfiles Response regulatory domain profile. 703 833 IPR001789 GO:0000160
Seca10g05373 1004 FunFam Histidine kinase 4 353 444 - -
Seca10g05373 1004 Pfam His Kinase A (phospho-acceptor) domain 381 446 IPR003661 GO:0000155|GO:0007165
Seca10g05373 1004 CDD HisKA 381 442 IPR003661 GO:0000155|GO:0007165
Seca10g05373 1004 Gene3D - 355 444 - -
Seca10g05373 1004 ProSiteProfiles Response regulatory domain profile. 860 996 IPR001789 GO:0000160
Seca10g05373 1004 Pfam CHASE domain 111 291 IPR006189 -
Seca10g05373 1004 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 447 IPR036097 GO:0000155|GO:0007165
Seca10g05373 1004 SUPERFAMILY CheY-like 699 834 IPR011006 -
Seca10g05373 1004 SMART HisKA_10 381 446 IPR003661 GO:0000155|GO:0007165
Seca10g05373 1004 FunFam Histidine kinase 4 112 327 - -
Seca10g05373 1004 Pfam Response regulator receiver domain 861 992 IPR001789 GO:0000160
Seca10g05373 1004 ProSiteProfiles CHASE domain profile. 108 320 IPR006189 -
Seca10g05373 1004 Gene3D - 59 111 - -
Seca10g05373 1004 Gene3D - 445 680 IPR036890 -
Seca10g05373 1004 PANTHER TWO-COMPONENT HISTIDINE KINASE 26 993 - -
Seca10g05373 1004 CDD HATPase_EvgS-ArcB-TorS-like 498 676 - -
Seca10g05373 1004 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 435 673 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05373 Seca-Chr10 122209502 122217386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05373 11 1004 Histidine Kinase Gene Family AT2G01830 71.897 0.0 1427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca10g05373 HATPase_c 4.6e-31 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05373 10 122209502 122217386 Seca10g05373 10 122209502 122217386 ECH