Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05362 ATGAATGGAGGTAAAGATCTTCTTCCCAATGGTGTTGGCTCTGAAGGGGAGAACTCAAAAAGCAAAGGGTCATCACTGCAACATGATAAAGTGCCCACAAAAGTTGGGAGGTCTGGGTTGCAAGAATTGACCCTCAGCTACCTCTGTGATAACCCAAAATTGGATCTTGTTGAGAAACATGCACCTGATAGAACCTTGCTGCTGAATTCCTTGAGTTGCAAAGGTAAAGAAATTGTCATTTCTGAGAATTCAAATCATGATGAGAAATGGGTAGAGAGAGATTTTCTGAGTTTGAGTGAGACTAGGGAGAACTCTTCAAAGAGATCCATTGAGGAAGAAGGTGAAAGGGAAGAAGATAGAGGGAAGAAGCAGCAGAAGCTTGAGACTCTTAATCTCTCTCTTGCTTTGCCTGATGTGTCAGTGTCACTTTCTCTCACTGCTTCAAACGCTTTACAAAATGGAGATGTTAGGCCAAAGCCTAGCAAGCGATCAACAACTACCATCAATTCATGTTCAAATGATTATACAACTGCTTCTCTATCATACTCTTATTCTCACCCTTTCTCACACAACCCAAGTTGCTCACTTACTCATAATTCAACAGAGAATTTTGAGTACTCAGCCAGCAAAGATGATCCAATTTGGTATTGTGGGGAAGGGACTAATGGGTCAGTTCATAGTAGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGGCCAATCATGGTGGTGGACTTAATTCCTTTATGCAAGGGAATAGTCACTATAAAACTACAAGTTCAGATAACCATTCTTTTTCCCCCTCAGATTTGCCAGCCAGGCCAAGATTTGAAGCACAGTCAGAGGGATCAAGGGGAAAGAATTCTGAGAATCTGAGTCTGAGAGGTGTTGATGGTGGGAAAATGTTGAAGCTTTCTAGGCCTGAGAGAATTCTAAGGGAAATTGTTTCTGAGTCTATTCCTGACATGGCACTGACATTTCAGGAGTTTACTGATGAAGTCATGGCATCAATTAAGGAATACTTGAAAAGCCTAATTGAAATGCAAGGGGTGAAGAAGGAAGAATTAGTAAATCTCCAGAAACAGGTTGAGAGGAGATCTGACCTTACCAGAGAGACTCTTTCAAAGTGCCATAAAGAGCAATTAGAGATTTTAGTTGCTATCAAGATGGGGCTTGCTAGTTTCTTATTTGGTAAATTTCAATTCTCTGAGATGGTTGAAGTTTTCTTGTATAAGAGATGTAGAAATCTGAACTGCAAGAGCTTGTTACCTGTTGATGACTGTGAATGCAAGATTTGCTCTGGAAATAAGGGATTTTGCAGTTCTTGCATGTGTCCTGTTTGTTTGAACTTTGATTGTGCAAGTAATACTTGTAGTTGGGTTGGCTGTGATGTTTGTTACCACTGGTGTCATGCCACCTGTGGCATTGAGAGGAATCTAATCAAACCTGGGCCTAGCTTGAAGGGTCCTTCAGGGACCTCTGAGATGCAGTTTCATTGTATTGGCTGTGGACATGCTTCAGAAATGTTTGGATTTGTGAAAGATGTCTTCCTGTGTTGTGCTAAGGATTGGGGCCTAGAAACATTGATGAAAGAGCTTGATTGTGTAAGGAAGATTTTCAGGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATATCAAAGCAGATGATATGCTGTTAAAGCTTCAAGCTAAACTGATATCTCCTTTGGATGCCTGCAATCACCTCACACAGTTTTTCAGCTATGCAGATGGCATGTCAGAATTTCCTGCTTCTGGAACATCATCAAAGGATTTATCAGCATCTCAGACTAACCTTACAATGGACACAGCATCAGTTTCACAATCTACTTCTCTAATACCAAAATATACTAATGAAATGAACTATTCTAGGTCACATGATCTTCATCAAAATGACCTCAAAATCTCCCTCTTAAGTGAACTAAAAAATGAGACTGATTTCCACATGGGGTCTTTATTAAGGAAAGGTGGGCTTGAAAGCTTTGAAAGCATTGTGAGGATAAAAGAGGAAGAAGCCAAAATGTTCCAAACAAAGGCAGATGAAGCAAGGAGAGAGGCAGAAGGGTTTCAAAGGATGATCAAGACAAAGGCTGCACAAATGGAAGAAGAGTATACTGAAAAGCTTGGCAAACTCTGTTTGCATGAGACAGAGGAAAGGAGGAGGAACAAATTAGAGGAACTCAACAGCTTAAAGAATCTCCAATTTGATTACTTTAAAATGAAAATGAGAATGGAAGATGAGATTGATGGTTTGTTGAAGAGAATGGAGGCAACAAAGCAGCCATTGGTTTAG 2310 0.4048 MNGGKDLLPNGVGSEGENSKSKGSSLQHDKVPTKVGRSGLQELTLSYLCDNPKLDLVEKHAPDRTLLLNSLSCKGKEIVISENSNHDEKWVERDFLSLSETRENSSKRSIEEEGEREEDRGKKQQKLETLNLSLALPDVSVSLSLTASNALQNGDVRPKPSKRSTTTINSCSNDYTTASLSYSYSHPFSHNPSCSLTHNSTENFEYSASKDDPIWYCGEGTNGSVHSRFKPIGDGVALANHGGGLNSFMQGNSHYKTTSSDNHSFSPSDLPARPRFEAQSEGSRGKNSENLSLRGVDGGKMLKLSRPERILREIVSESIPDMALTFQEFTDEVMASIKEYLKSLIEMQGVKKEELVNLQKQVERRSDLTRETLSKCHKEQLEILVAIKMGLASFLFGKFQFSEMVEVFLYKRCRNLNCKSLLPVDDCECKICSGNKGFCSSCMCPVCLNFDCASNTCSWVGCDVCYHWCHATCGIERNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLCCAKDWGLETLMKELDCVRKIFRGSEDRKGKELHIKADDMLLKLQAKLISPLDACNHLTQFFSYADGMSEFPASGTSSKDLSASQTNLTMDTASVSQSTSLIPKYTNEMNYSRSHDLHQNDLKISLLSELKNETDFHMGSLLRKGGLESFESIVRIKEEEAKMFQTKADEARREAEGFQRMIKTKAAQMEEEYTEKLGKLCLHETEERRRNKLEELNSLKNLQFDYFKMKMRMEDEIDGLLKRMEATKQPLV. 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05362 769 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 66 767 IPR004082 -
Seca10g05362 769 MobiDBLite consensus disorder prediction 249 267 - -
Seca10g05362 769 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 404 425 IPR004082 -
Seca10g05362 769 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 665 685 IPR004082 -
Seca10g05362 769 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 325 347 IPR004082 -
Seca10g05362 769 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 523 542 IPR004082 -
Seca10g05362 769 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 365 380 IPR004082 -
Seca10g05362 769 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 704 726 IPR004082 -
Seca10g05362 769 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 450 470 IPR004082 -
Seca10g05362 769 MobiDBLite consensus disorder prediction 249 294 - -
Seca10g05362 769 Coils Coil 719 739 - -
Seca10g05362 769 CDD PHD_OBE1_like 443 502 IPR047578 -
Seca10g05362 769 MobiDBLite consensus disorder prediction 1 34 - -
Seca10g05362 769 Coils Coil 671 691 - -
Seca10g05362 769 MobiDBLite consensus disorder prediction 14 28 - -
Seca10g05362 769 Pfam Coiled-coil region of Oberon 631 758 IPR032535 -
Seca10g05362 769 MobiDBLite consensus disorder prediction 101 124 - -
Seca10g05362 769 Pfam PHD - plant homeodomain finger protein 413 537 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05362 Seca-Chr10 122102497 122105645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05362 413 617 PHD Gene Family AT5G57380 24.390 6.89e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05362 10 122102497 122105645 Seca10g05362 10 122102497 122105645 ECH