Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01027 ATGGTTTTGTCATGGACAAAAGGGAGAGTTTTTCGCCGTGCCCGTAAAGGCAAAGAGCTGAATGATTTGGAGGTGGAGGTTGCTATCCCTTCCCATTTTCGGTGTCCGGTGACATTGGATTTGATGAAAGACCCTGTGACACTTTGTACAGGGATAACCTACGACAGGGACAGCATAGAGAAGTGGTTTGAATCAGGGAACAACACGTGCCCTGTAACAAAAGGAGAGCTTACAAGCTTTGACATGATCCCAAACCATGCAATTCGAAGGGTGATTCAAGATTGGTGTGTGGAGCATCGTTCTTATGGGATTGAAAGGATCCCAACTCCTAGGATTCCTGTCTCTCCTTACGAGGTTTCAGACACGTGTTTGAGGATCTTGTCGGCTGCTCAACATGGTGATGAAAACAAGGGAAGGGAATTGGTGAGGAAGGTCAGGGCTTGGGGGAAAGAGAGTGAGAGGAACAAGAGGTGCATAGTGTCTAATGGTGCTCCTCTTGTTTTGGCTAAGGCTTTTGATTCTTTCTCACGTGGTTCAATTGAGAAGAACGTGGTTGTTTTGGAAGAGATCTTGGGGGTGTTGACTTGGATGCGTCCTTTAACTGAAGAGGGTAGATCCATTTTGGGGTCTGAGGCTTCTATGAGTTGCATGGTTTTGTTCCTCAATGATAAACAACTTTCCACAAGGCAAAGTGCTGCTTTGTTGCTCAAGGAAATGCCTATTAAGGCATTGGAAAAAACACAAGGGATTGTTGAATCTTTGGTTAAGATGATTAGGGAGCCTATTGGTCCTAATGCTACCAAAGCATGCTTGTCAACAATTTATCACTTGGTTTCCTCATCAGAGAACAAAGGGGTATTCTCACAAAGATTTGTGGAACTGGGTTTGGTTTCACTCTTGCTGGAGACCCTTGTTGATGCTGAAAGAGGGATCTGTGAGAAAGCTTTGGGGGTATTGAATTGCATTTGTGACTGCAAACAAGGGATAGAATCAGCAAAGACAAATGCTTTGACCTTACCTCTTGTGATTAAGAAGCTTTTAAGGGTATCAGAGTTGAGTTCTTGTTTTGCAGTCTCTATTCTTTGGAAGCTTTGTGATAAGACCGAGGAAGAAGTCTTGATTGAGGCACTTCAAGTTGGGGTGTTTCAGAAACTCCTTGTCTTGCTTCAGGTGGGTTGTAGCGAGAGTACAAAGGAAAAGACTACTGAGTTGTTGAGATTGTTGAATGGTTACAGGAGCAAAGCAGAGTGTGTTGATTCATCATTGGATTTCAAACACCTTAAGAAGCCCTTCTAA 1296 0.4367 MVLSWTKGRVFRRARKGKELNDLEVEVAIPSHFRCPVTLDLMKDPVTLCTGITYDRDSIEKWFESGNNTCPVTKGELTSFDMIPNHAIRRVIQDWCVEHRSYGIERIPTPRIPVSPYEVSDTCLRILSAAQHGDENKGRELVRKVRAWGKESERNKRCIVSNGAPLVLAKAFDSFSRGSIEKNVVVLEEILGVLTWMRPLTEEGRSILGSEASMSCMVLFLNDKQLSTRQSAALLLKEMPIKALEKTQGIVESLVKMIREPIGPNATKACLSTIYHLVSSSENKGVFSQRFVELGLVSLLLETLVDAERGICEKALGVLNCICDCKQGIESAKTNALTLPLVIKKLLRVSELSSCFAVSILWKLCDKTEEEVLIEALQVGVFQKLLVLLQVGCSESTKEKTTELLRLLNGYRSKAECVDSSLDFKHLKKPF* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01027 431 CDD RING-Ubox_PUB 30 82 IPR045210 -
Rops9g01027 431 ProSiteProfiles U-box domain profile. 28 102 IPR003613 GO:0004842|GO:0016567
Rops9g01027 431 FunFam RING-type E3 ubiquitin transferase 23 105 - -
Rops9g01027 431 Gene3D - 120 409 IPR011989 -
Rops9g01027 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 106 IPR013083 -
Rops9g01027 431 SUPERFAMILY ARM repeat 140 395 IPR016024 -
Rops9g01027 431 PANTHER WDSAM1 PROTEIN 26 418 IPR045185 GO:0061630
Rops9g01027 431 SUPERFAMILY RING/U-box 25 105 - -
Rops9g01027 431 SMART Ubox_2 32 95 IPR003613 GO:0004842|GO:0016567
Rops9g01027 431 Pfam U-box domain 29 100 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01027 Rops-Chr9 16880622 16882151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01027 24 431 U-box Gene Family AT5G37490 46.172 3.76e-118 350
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01027 9 16880622 16882151 Rops9g01027 9 16880622 16882151 ECH