Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01061 ATGTCCAACACTATGCAACAACCGGGTTTTGATTCCCGGCATCATGACCACAATAAACCCGATTCCAGAAAACTCGATCTGGGTTCAACCACCGCCGCTCCGAAACTCCCCCACGACGGAAAGCTTTCCAGCCGTTCCGGCGAGCTGGCAGCGGCGGCGAGCAGTAGGAAGCCCGGTCACCGGAGATCGGTCTCCGCCGGAGCTCCGTTAATCTACTCCGGCGGAACAAACGTTGTTTCAGTTTCGAGTCCGAGTTTGCTACCAAGTGGGAACATTTGTCCCTCTGGGAAGATCCTTAGACCGGGTTTACCCTCTCGTGGACCGAACCGGACCGAAGTTTTGGGTTCGGGGACAGGGAACTATGGTCGTGGAAGCATAATGCGGGGTTCTGGAGGGAATAATCATGTGGGTGCGGGTGCATCACAGGTTATGGTGAAGCGAGTGATGAGTGGTTCTGATCCTGAAGAGGTGAAGAGGGTTGGGAATGAGTTGTATAGGAGTGGGAACTTTTCTGAGGCTTTAGTGTTGTATGATCGTGCTGTTTCCATGTCGCCGGTAAATGCTGCTTGCCGGAGTAACCGTGCGGCGGCGCTCACGGCGTTGGGGAGGTTGGGTGAGGCGGCGAGGGATTGTGATGAGGCTGTGAAGTTGGAACCTTCTTATGCCAGGGCCCATAAAAGGCTTGCCTCTCTTTATCTACGGTTTGGGCAGGTTGAAAACTCAAGGCGCCATCTATGTTTATCTGGGGTGCAGGAGGATCAATCAGAAGAGCAGAAGCTGATGTTGTTGGAGAAGCATCTAAATCGATGTGCAGATGCAAGGAAGATTGGTGATTGGAAGAGGGCACTTAGGGAATCAGATGCTGCCATTGCGGTTGGGGCAGATTTCTCACCTCAGCTTGTGTGTTGTAAAGCGGAAGCTTATTTAAAACTCCATCAACTTGAGGATTCTGAATCCTGTCTCTCAAACATTCCCAAGTTGGAAGGTTGTCCTCCAGCCTGCTCTCAAGCCAAGTTCTTTGGTATGGCTGGTGAAGCCTATGTGCCTTTTGTCTCTGCGCAGGTTGAGATGGCCTTGGGAAGGTTTGAGAATGCTGTGACAGCAGTAGAAAAGGCTAGCCTGTTAGATTATAGTAACATTGAAGTTGCGAGGATTGTAAATATCGTGAGAATGGTGGCGAGAGCTCGTTCCAGGGGCAATGATCTTTTCAGCTCTGGCAAATTTTCTGAAGCTTGTGCTGCTTATGGAGAAGGCCTCAAATATGACAATTCCAACTATGTTTTATATTGCAATAGAGCTATTTGTTGGTCTAAACTTGGACTATGGGAACAATCTGTTCAAGACTGCAACCAAGCTCTTAACATTCAACCAAATTACACCAAGGCACTTTTCCGCAGGGCTGCATCGAATGCCAAGCTTGAAAGATGGGCAGAAGTTGTTAAAGATTACCAGGCCTTAAAACGTGAACTCCCTAATGACAATGAAGTTGCTGAATCTCTTCATCAGGCTCAACTAGCATTGGAAAAATCTCATGTTGGAGTATTAAATGGTACCAAGTTCGGAGTTGAGGTCGAAGAAATCTCTTCATTAGATAAATTTAAAGCTGCAATTGCTTCTGCTGGTGTTTCAGTAGTTCATTTCAAAGAAGCATCAAATGAACTATGTGAAGAAATATCTCCATTCATAAATACACTATGTGTTAGATATCCTGCTGTTAAATTTATTAAGGTGGACGTGGAGGAGTGTCTAGCAATAGCAAAAGCTGCAGGCATAAGAAGTGTTCCAACTTTTAAAATTTATAAAAATGGTGAGAAGGTGAAGGAGATGATCCGCCCAACCCATCAGTTATTAGAGGACTCAGTAAGGAAAAGTAATGGTCTTTAG 1884 0.4671 MSNTMQQPGFDSRHHDHNKPDSRKLDLGSTTAAPKLPHDGKLSSRSGELAAAASSRKPGHRRSVSAGAPLIYSGGTNVVSVSSPSLLPSGNICPSGKILRPGLPSRGPNRTEVLGSGTGNYGRGSIMRGSGGNNHVGAGASQVMVKRVMSGSDPEEVKRVGNELYRSGNFSEALVLYDRAVSMSPVNAACRSNRAAALTALGRLGEAARDCDEAVKLEPSYARAHKRLASLYLRFGQVENSRRHLCLSGVQEDQSEEQKLMLLEKHLNRCADARKIGDWKRALRESDAAIAVGADFSPQLVCCKAEAYLKLHQLEDSESCLSNIPKLEGCPPACSQAKFFGMAGEAYVPFVSAQVEMALGRFENAVTAVEKASLLDYSNIEVARIVNIVRMVARARSRGNDLFSSGKFSEACAAYGEGLKYDNSNYVLYCNRAICWSKLGLWEQSVQDCNQALNIQPNYTKALFRRAASNAKLERWAEVVKDYQALKRELPNDNEVAESLHQAQLALEKSHVGVLNGTKFGVEVEEISSLDKFKAAIASAGVSVVHFKEASNELCEEISPFINTLCVRYPAVKFIKVDVEECLAIAKAAGIRSVPTFKIYKNGEKVKEMIRPTHQLLEDSVRKSNGL* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01061 627 CDD TRX_family 533 618 - -
Rops7g01061 627 FunFam TPR repeat-containing thioredoxin TTL4 518 625 - -
Rops7g01061 627 MobiDBLite consensus disorder prediction 1 66 - -
Rops7g01061 627 MobiDBLite consensus disorder prediction 10 24 - -
Rops7g01061 627 ProSiteProfiles TPR repeat profile. 154 187 IPR019734 GO:0005515
Rops7g01061 627 Gene3D Tetratricopeptide repeat domain 152 512 IPR011990 GO:0005515
Rops7g01061 627 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 51 622 IPR044534 -
Rops7g01061 627 SMART tpr_5 188 221 IPR019734 GO:0005515
Rops7g01061 627 SMART tpr_5 154 187 IPR019734 GO:0005515
Rops7g01061 627 SMART tpr_5 392 425 IPR019734 GO:0005515
Rops7g01061 627 SMART tpr_5 426 459 IPR019734 GO:0005515
Rops7g01061 627 SMART tpr_5 460 493 IPR019734 GO:0005515
Rops7g01061 627 SMART tpr_5 346 379 IPR019734 GO:0005515
Rops7g01061 627 MobiDBLite consensus disorder prediction 98 121 - -
Rops7g01061 627 Pfam Thioredoxin 531 613 IPR013766 -
Rops7g01061 627 SUPERFAMILY TPR-like 153 380 IPR011990 GO:0005515
Rops7g01061 627 SUPERFAMILY Thioredoxin-like 435 623 IPR036249 -
Rops7g01061 627 Gene3D Glutaredoxin 514 625 - -
Rops7g01061 627 Pfam Tetratricopeptide repeat 161 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01061 Rops-Chr7 14107693 14112911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01061 166 239 Glycosyltransferase AT3G04240 35.135 2.88e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01061 7 14107693 14112911 Rops7g01061 7 14107693 14112911 ECH
Rops3g02045 3 37018086 37023462 Rops7g01061 7 14107693 14112911 PCT