Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02045 ATGTCACACTCTGGGAAACCCGTTTCCGAGTTAGGGCTCAGTGAGCGATTCCGTGACTCACTGAGTTGCAGCGACGATGCTAACAAACCCGATTTCCGAGAACTCGATCTGGTGGGTTCGCCTGTTTCACCGTTGCGAACTCGCCACCATCAAAGTGCAGCCAGCTCCAGCACGAGCAGTAGCAGCTCCTCTTCTGGTCAAAATGCTAACAACGCGGTTATGAGAAGATCCGATTCCGGCGAGCTTTCTGAGAATACCAGCCCGACCCGGAACTTCAAAACGGGTCATAGAAGATCTGATTCGGGCACATCTCAGCTGTTAACATATTCGGGGCAAAACCAGAGATCATCCTCCTCTTCATCCGCCGTGAGTTCGCCGCCGATTAACGTTCTTCCCGCTGGAAACATATGCCCCTCCGGCAGGGTTCTCAAGACCGGCATGGCGGCGGCCACGACTAGTCGGAGCTCCAGGACCGACGTATTGGGCTCCGGCACGGGGAATTACGACCATGGAAGCATAATGCGGGGCGGCAAAGGCGGTGCCGGTGATACGGCGGCGAGTGCGAGGATTGGCGGTGGTCGCGATGGTGATTCGGCGAAGAGGGTGGATCCGGAGAAATTGAAGAGAGTGGGGAATGAAGAGTATAAGAAGGGGCACTTTGCTAAGGCATTGTGCCTCTATGATCGGGCAATTTTGTTGTGTCCTGGCAATGCCGCCTACCGGAGCAACCGGGCAGCGGCGTTGACCGGTTTGGGACGGTCGGTGGAGGCGGTGAAGGCTTCTGAGGAGGCATTGAAGTTGGATCCCAATTATGGAAGAGCCCATCAGCGTTTGGCAACTCTTTATCTCAGATTAGGACAAGTTGAGAATGCAAGGAAGCACCTCTTTTATCCTGGGCTGCAGCCAGATCCTTCTGAGTTGCAGAAGTTGCAAATGGTGGAAAAGCATATTAAGAAATGTGGGGATGTCCGGATGCTAAGAGATTGGAGAAGTGTTATGAGGGAAGTTGATGTTGTTGTTGCTGTTGGAGTGGACTCTTGTGTTCAGATCTTTATGTGTAGAGTTGAAGCCCTTCTGAAGCTTCACCAAATTGGTGATGCCGAATTGAGTTTATTACAGATTCCTGAAGGTGAACTGCATCTAAATTGCTCATCACAGGCGAGATTTTTTGGGATGCTTTCTGAAGCTTATTGCTACTTTGTTAGAGCTCAGATTGAGATGGCTTGTGGAAGGTTTGAAAATGCAGTCACAGCTGCTGAGAAAGCTAGTCAGATCGATCCCCGAAACGTTGAAGTTGTTGTTTTGCTCAACAATGTAAGGATGGTGAGTAGAGCTCGATTGCGTGGGAATGATCTTTTTAAATCAGAAAGGTTCACTGAGGCATGCTCGGCATATGGGGAAGGTTTGAGGCTGGACCCTTCAAACTCTGTTCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTTGGCATTGGGAAAGATCAATTGAAGACTCCAATCAAGCTTTACGTGTCCAGCCAAATTACATAAAAGCCATTCTTCGAAGGGCGGCCTCAAATAGCAAGCTAGAAAGATGGGCAGAAGTAGTAAAGGATTATGAGCTCTTGAGGAAAGAACTACCAGATGACAATGAAGTTGCTGAAGCTCTATTTCATGCGCAAGTAACTACAATGGATAAGGAAAGGTTTCTGCTACTCATTTTACAGCTCGGCTATTTTGCAGATATCCTGATTCAGGTGGATATTCAAGAAAGCCCAACAGTTGCTACGGCTGAGAATGTTAGGATTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGGGTGAAGGAAATTGCGGGTTCTCCTTCGTCCCGCCCTCTGTCTTCGCCCCTCTCGCCGCTCATCCAACTCCGCCACCTTCCTAACATTGCCGGAGCTGCAATCTTCACTGCCATCGCCCTCAACAACAACAACAACAACAACAATTGTTTCATAGTCTTCTTTTTTCTTGTGTGTGCCATTTGGGAATCCAGAAAGTTTTTCTCGAAAAATCCCACATATCTGTGTTGTTTGGTTGCTGTGTGGGTCTTGGTTCAGGTAGAGGTTTCTGAGGGAGGAGCAACCAGTGAGGTCGACGGGGAGGTTTCTGGTGAGGGTGGGCACCTGCTGGGTGTGGAGGAGGTGAACGACGATGGACGATGA 2184 0.4922 MSHSGKPVSELGLSERFRDSLSCSDDANKPDFRELDLVGSPVSPLRTRHHQSAASSSTSSSSSSSGQNANNAVMRRSDSGELSENTSPTRNFKTGHRRSDSGTSQLLTYSGQNQRSSSSSSAVSSPPINVLPAGNICPSGRVLKTGMAAATTSRSSRTDVLGSGTGNYDHGSIMRGGKGGAGDTAASARIGGGRDGDSAKRVDPEKLKRVGNEEYKKGHFAKALCLYDRAILLCPGNAAYRSNRAAALTGLGRSVEAVKASEEALKLDPNYGRAHQRLATLYLRLGQVENARKHLFYPGLQPDPSELQKLQMVEKHIKKCGDVRMLRDWRSVMREVDVVVAVGVDSCVQIFMCRVEALLKLHQIGDAELSLLQIPEGELHLNCSSQARFFGMLSEAYCYFVRAQIEMACGRFENAVTAAEKASQIDPRNVEVVVLLNNVRMVSRARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLWHWERSIEDSNQALRVQPNYIKAILRRAASNSKLERWAEVVKDYELLRKELPDDNEVAEALFHAQVTTMDKERFLLLILQLGYFADILIQVDIQESPTVATAENVRIVPTFKIYKNGSRVKEIAGSPSSRPLSSPLSPLIQLRHLPNIAGAAIFTAIALNNNNNNNNCFIVFFFLVCAIWESRKFFSKNPTYLCCLVAVWVLVQVEVSEGGATSEVDGEVSGEGGHLLGVEEVNDDGR* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02045 727 MobiDBLite consensus disorder prediction 146 165 - -
Rops3g02045 727 Pfam Tetratricopeptide repeat 252 295 - -
Rops3g02045 727 SUPERFAMILY TPR-like 442 552 IPR011990 GO:0005515
Rops3g02045 727 SMART tpr_5 204 237 IPR019734 GO:0005515
Rops3g02045 727 SMART tpr_5 396 429 IPR019734 GO:0005515
Rops3g02045 727 SMART tpr_5 238 271 IPR019734 GO:0005515
Rops3g02045 727 SMART tpr_5 442 475 IPR019734 GO:0005515
Rops3g02045 727 SMART tpr_5 510 543 IPR019734 GO:0005515
Rops3g02045 727 SMART tpr_5 476 509 IPR019734 GO:0005515
Rops3g02045 727 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 557 IPR044534 -
Rops3g02045 727 MobiDBLite consensus disorder prediction 45 90 - -
Rops3g02045 727 MobiDBLite consensus disorder prediction 1 201 - -
Rops3g02045 727 Pfam Thioredoxin 577 619 IPR013766 -
Rops3g02045 727 Gene3D Tetratricopeptide repeat domain 202 562 IPR011990 GO:0005515
Rops3g02045 727 ProSiteProfiles TPR repeat profile. 204 237 IPR019734 GO:0005515
Rops3g02045 727 MobiDBLite consensus disorder prediction 19 33 - -
Rops3g02045 727 Pfam Tetratricopeptide repeat 398 429 IPR019734 GO:0005515
Rops3g02045 727 SUPERFAMILY TPR-like 204 431 IPR011990 GO:0005515
Rops3g02045 727 SUPERFAMILY Thioredoxin-like 577 617 IPR036249 -
Rops3g02045 727 ProSiteProfiles TPR repeat profile. 396 429 IPR019734 GO:0005515
Rops3g02045 727 Gene3D Glutaredoxin 568 630 - -
Rops3g02045 727 MobiDBLite consensus disorder prediction 98 128 - -
Rops3g02045 727 CDD TRX_family 576 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02045 Rops-Chr3 37018086 37023462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02045 216 512 Glycosyltransferase AT3G04240 22.591 3.01e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02045 3 37018086 37023462 Rops3g02045 3 37018086 37023462 ECH
Rops3g02045 3 37018086 37023462 Rops7g01061 7 14107693 14112911 PCT