Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02028 ATGATGAAGCCTTGGATGCTCAGATCCGTGTCCCGCAGCTGCTCTCAGTTAGCTCGCCGTGGCTACGCCACCGAGCCGGTGCCGGAGCGCAAGGTGGCCGTCCTCGGCGCTGCCGGTGGGATCGGACAGCCCCTCTCTCTTCTGATGAAGCTCAATCCCCTCGTTTCAAGCCTCTCCCTTTACGATATCGCCGGCACCCCTGGTGTCGCCGCCGATGTCAGCCACATCAACACCAGATCTGAGGTAGTTGGGTACCAAGGGGAAGAGCAGCTTGGAAAAGCTTTGGAAGGAGCAGATGTTGTTATAATTCCTGCTGGTGTGCCCAGAAAGCCGGGAATGACTCGTGATGACCTTTTCAACATTAATACCGGCATTGTCAAGTCACTGTGTAATGCTATTGCTAAGTACTGTCCCCACGCCCTTGTTAACATGATAAGCAATCCAGTGAACTCCACTGTTCCTATTGCTGCTGAGATTTTCAAGAAGGCAGGGACATATGATGAGAAGAGATTGTTTGGTGTTACCACCCTCGATGTTGTTAGGGCAAAAACTTTCTATGCTGGGAAGGCCAAAGTTCCAGTTGCTGGGGTCAATGTACCTGTCGTTGGTGGCCATGCAGGCATTACTATTCTGCCTCTATTTTCTCAAGCAACACCAAAAGCCAATCTGGGTGATGATGAAATTAAGGCTCTTACAAAGAGGACACAAGATGGAGGAACAGAAGTTGTGGAAGCTAAGGCTGGAAAAGGTTCTGCAACTTTGTCAATGGCTTATGCTGGAGCCCTTTTTGCTGATGCTTGCCTCAAGGGCCTCAACGGGGTCCCAGATGTTGTTGAGTGCTCATTTGTGCAATCCAGTGTCACTGAACTTCCTTTCTTTGCATCCAAGGTGAGGCTTGGGAAGAATGGTGTGGAGGAAGTTCTTGGTTTGGGTCCTCTCTCAGATTATGAGAATCAAGGGCTTGAAACCCTTAAACCTGAACTCCTAGCATCTATTGAGAAGGGAATCAAATTTGCCAACCAGTAA 1026 0.4961 MMKPWMLRSVSRSCSQLARRGYATEPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADVSHINTRSEVVGYQGEEQLGKALEGADVVIIPAGVPRKPGMTRDDLFNINTGIVKSLCNAIAKYCPHALVNMISNPVNSTVPIAAEIFKKAGTYDEKRLFGVTTLDVVRAKTFYAGKAKVPVAGVNVPVVGGHAGITILPLFSQATPKANLGDDEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSSVTELPFFASKVRLGKNGVEEVLGLGPLSDYENQGLETLKPELLASIEKGIKFANQ* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02028 341 FunFam Malate dehydrogenase 28 174 - -
Rops3g02028 341 ProSitePatterns Malate dehydrogenase active site signature. 174 186 IPR001252 GO:0006108|GO:0016615
Rops3g02028 341 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 175 338 IPR022383 GO:0016616
Rops3g02028 341 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 173 IPR036291 -
Rops3g02028 341 CDD MDH_glyoxysomal_mitochondrial 31 339 IPR010097 GO:0006099|GO:0030060
Rops3g02028 341 SUPERFAMILY LDH C-terminal domain-like 174 340 IPR015955 GO:0003824|GO:0016616
Rops3g02028 341 NCBIfam malate dehydrogenase 31 340 IPR010097 GO:0006099|GO:0030060
Rops3g02028 341 Gene3D - 175 340 IPR015955 GO:0003824|GO:0016616
Rops3g02028 341 PANTHER MALATE AND LACTATE DEHYDROGENASE 13 341 - -
Rops3g02028 341 Pfam lactate/malate dehydrogenase, NAD binding domain 31 173 IPR001236 GO:0016491
Rops3g02028 341 Gene3D - 29 174 - -
Rops3g02028 341 FunFam Malate dehydrogenase 175 341 - -
Rops3g02028 341 PIRSF Lac_mal_DH 26 339 IPR001557 GO:0016616|GO:0019752
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02028 Rops-Chr3 36759534 36762983 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02028 3 36759534 36762983 Rops3g02028 3 36759534 36762983 ECH