Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00790 ATGGATCCTAACTTTTCTGGAGGTGGAGATTTCACAGACGGCTACCAGTTTGGTGAAGGAGGGAGCATACCAATCTCTGATCCAAATCAGCAGGCAATAAACTGGGATGTGTATCAACAATATGAGAGTCTCCTTGATGTGGACCCAAATGGTTTAGCTGTGCATACAAGCCCTATAGAGGGTCAAGGTGTTTCTGTGGCAACCATGTCCATGACCTCGGTGACTGATCCTTCTTTGGAAGACGACTTCTCAGAAACCGCAAAGTTCATTAGCCAAATCCTCATGGAAGAGAACGTTGAACAGAGACCATTTTATGACTCACTGAGCTTGCAAGTCACAGAGAAATCATTCTATGATGCTCTCACAGACAAAACACCTCTTTCCCCCAATCAGCACCCCTTAGATATTCCAAGTCCTGATGGTGGAACAACCAGCAGCTACAGCAACAGCAACAGCAACAGCAGCGGTGGCGGCGCCAACGACAATTCTAGTGAGTTGAAGCCCCTTTCCCCGGATACCCCTGTTTCTGTTCTTGGTGATCATGCTTCTCAGTTTAACTCCCATGCTATTTCTCACCCTCCCTCTCAACCTCCTTCCACTGGTGTTAGTGATGGGCTGTTAGATTTTGATTCTTCTGTTTCCAAACTGTTGGTACAAAATATTTTCAGTGATACAGATACCATCTCCCAGTTTAGGAGAGGGTTAGAGGAAGCTAGCAAGTTTCTTCCTCCGGGACCTCAGCTTGTAACTGGTCTAGAGTCAAAGGCAGAAGCAGCTACTACTGTTGGGGACAACACTTTTGGGTTGAAGGGTAGAAAGAATCATGAGCGGGAAGAAAGTGATACGAATGAAGAAGGGAGAAGTAACAAGCAGTCAGCAGTTGGTGTTGTTGATGAGGGTGACTTATCAGATATGTTTGATCGAGTGTTGGTTTGTGTGGAACCTGCCCCACTGTGCAATAAACATGATTGCTTGCAGAATGGACAAGTGAAAGCTGAGCAGCCAGGTGAAAAGCCACCTTCATCAGATGGAGGGAAAGCTCGTCTCAAAAAACAAGATAGGAAGAAGGAAACTATAGATTTGAGGGCTCTTCTGCTTCTATGTTCACAAACTGTGTATGCCAATGACTACAGGACTGCTAATGAACTACTAAAGCAGATTAGGCAGCATTCTTCTCCCTTTGGGGATGCATCACAGAGGTTGGCTCATTACTTTGCCAATGGCCTCGAGGCACGCTTGGTTGGCTATGGTACTGGAGCACAACTATTTCATTCCTCTCCGAGCTCCAAGAGGATCACTGCAGCTGAGTTCTTGAAAGCTTACCAGGTTTCTCTATCTACTAGCCCGTTCAAGAAGTTCATGTATTTCTTTGCAAATAAAATGATTATGAAAGCAGCTGCAGAGGCAGAAACCCTTCATATTATCGATTTTGGTATCCTGTATGGTTTCCAGTGGCCAATACTTATTAAGTTATTATCAAATAGAGAAGGTGGACCCCCCAAGCTGAGGATCACAGGGATAGATTTTCCCCGACCTGGCTTTCGCCCCACGGAAAGAATTGAGGAGACTGGTCGTCGTTTGGATAACTATTGCAAGCGTTACAATGTTCCCTTTGAGTACAATGCCATAGCATCACGGAACTGGGAAACCATTCGAGTTGAAGACCTTAAAATTGAGAGCAACGAGCTAGTTGTTGTGAACTGTCTGATGAGGTTCAAGAATATTCTGGATGAGACAATTGAAGTGAACAGTCCTAGAAATGCAGTTCTGCATTTGATCAGGAAGATAAATCCAAATATTTTTACTCAGTCCATCGTCAATGGATCTTACAATGCCCCTTTCTTTGCCTCACGGTTTAGGGAGGCTTTGTTCCATTTTTCTGCTATTTATGATATGTGTGACACTGTCATACCTCGTGACAATGAATGGAGGATGATGATAGAGAGAGAGATTGTGGGTCGAGAGGCAATGAATGTTATAGCTTGTGAAGGTTCTGAGAGGGTTGAGAGGCCTGAGACATACAAACAGTGGCAGGCTAGAAATACGAGGGCTGGTTTCAAGCAGCTCCCACTGAACCAGGAATTAATGGCCAAATTTAGGACTAAGTTAAGGAAATGTACTAGACTAAAGGTTCTGGTATCCGTGGTCTGGCCTATTTACTTAACCTTCTGGTGCTGTGATGAAAACTCGTCCACGGTTTCTACCAAGTTACTCTAA 2217 0.4452 MDPNFSGGGDFTDGYQFGEGGSIPISDPNQQAINWDVYQQYESLLDVDPNGLAVHTSPIEGQGVSVATMSMTSVTDPSLEDDFSETAKFISQILMEENVEQRPFYDSLSLQVTEKSFYDALTDKTPLSPNQHPLDIPSPDGGTTSSYSNSNSNSSGGGANDNSSELKPLSPDTPVSVLGDHASQFNSHAISHPPSQPPSTGVSDGLLDFDSSVSKLLVQNIFSDTDTISQFRRGLEEASKFLPPGPQLVTGLESKAEAATTVGDNTFGLKGRKNHEREESDTNEEGRSNKQSAVGVVDEGDLSDMFDRVLVCVEPAPLCNKHDCLQNGQVKAEQPGEKPPSSDGGKARLKKQDRKKETIDLRALLLLCSQTVYANDYRTANELLKQIRQHSSPFGDASQRLAHYFANGLEARLVGYGTGAQLFHSSPSSKRITAAEFLKAYQVSLSTSPFKKFMYFFANKMIMKAAAEAETLHIIDFGILYGFQWPILIKLLSNREGGPPKLRITGIDFPRPGFRPTERIEETGRRLDNYCKRYNVPFEYNAIASRNWETIRVEDLKIESNELVVVNCLMRFKNILDETIEVNSPRNAVLHLIRKINPNIFTQSIVNGSYNAPFFASRFREALFHFSAIYDMCDTVIPRDNEWRMMIEREIVGREAMNVIACEGSERVERPETYKQWQARNTRAGFKQLPLNQELMAKFRTKLRKCTRLKVLVSVVWPIYLTFWCCDENSSTVSTKLL* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00790 738 MobiDBLite consensus disorder prediction 122 205 - -
Rops3g00790 738 ProSiteProfiles GRAS family profile. 352 736 IPR005202 -
Rops3g00790 738 MobiDBLite consensus disorder prediction 177 205 - -
Rops3g00790 738 MobiDBLite consensus disorder prediction 269 286 - -
Rops3g00790 738 MobiDBLite consensus disorder prediction 330 353 - -
Rops3g00790 738 MobiDBLite consensus disorder prediction 122 170 - -
Rops3g00790 738 MobiDBLite consensus disorder prediction 265 296 - -
Rops3g00790 738 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 281 708 IPR005202 -
Rops3g00790 738 Pfam GRAS domain family 361 707 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00790 Rops-Chr3 9657370 9660120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00790 88 703 GRAS Transcription Factor Family AT1G07530 48.792 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops3g00790 GRAS 1.6e-102 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00787 7 10618844 10621296 Rops3g00790 3 9657370 9660120 PCT
Rops3g00790 3 9657370 9660120 Rops7g00786 7 10605374 10607578 PCT