Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01393 ATGGATAATGGTTGCTTCCCTTCTCCACGCCTTGATGCTTTTCCAGCTGGTCTGAGAGTTCTCGTTGTTGATGATGATCTAACATGGCTTAGGATCCTTGAAAAGATGCTCAAGAAGTGTTTTTACGAAGTGACTACGTGTTGTTTGGCAACTGACGCTCTAAAAAAGCTTCGTGAAAGGAGAGATGCATATGACATAGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTCAAGCTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCAATAAGGATGAAAGAACTGCGAAATATATGGCAACATGTCTTTAGAAAAAGAATACATGAGGCAAGAGAATTTGAAAGTCTTGAGGGTTTTGAGGGCTTTCACTTAAATGGATCAGATCACTCTGATGATACCAACCTGTTTGCTGTAGAAGATATGACCTCAATGAAAAAAAGGAAAGATATAGATAATAAACATGATGACAAAGAATTTGGAGATCAATCTTCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTGGATTTGATGAATGTTCCAAGGCTGTCTAGAGAAAATGTTGCTAGTCACTTGCAGAAATACCGGCTATACTTGGGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCTTCAAGTGGAACAAAGCAGTCGGATTCACCTTCAAAAGATCCAGGAAGTTTTAGTTTTCTGAACTCAACAAACAAGCAACAAAATGATGTTGAAATTGACAGCACCAAATATTCAGATGGAACATTACAGCTTCAGATGGATGCTACAAGTCATGACGGTGATCTCAAGGGAATTGTGTCAGAGCTCACAGCAGAAAAAAGAAGAGCTTTGATGACTAGTGACATTCCTGACCCAAAGATAAGAATGAGTTCACATATGGGCCTTAATCAACCTTTTACATCTGTGGAGTCAGAAGCAAACCATGCAGTATTTGATTGCACCATACCAACACAGTACTCTTGGAGTGAAGTTCCAAAAAGGTCGCTTGAAGAAAAACAAGAGACACTTATTCAATTAAAGGATAGCTTCAGCCAGTTGCCATTACATGGTATGCAGCATCACATTCAAGTTGATCAATCACAATCAATTTCTTCTTCAATTAATTCCAGTCCCTCTGTAACACAAGAGGTTGCTTCCTGTTTAGAAACCAAGCCTTCATATGCTGATTACAAGAGTGATTACATTAGTCCTGTGAATTCAGTAGGGTCTGCAGTTGACACCTTTCCTATTCAGTCCAAAAGCCTTATGGTGAATGATCAATCTCCAGAGCCCATTTTCACTTCAAATTTGGATTTGAAAACACATGGATTTAATCTTGAATGTATTTCTGATCTGGAATTTTACCAAAGAAACCTGCTTTTGGGTGGTGAGGTAGCTTCTGCACCTTTGGAGGAGGACTTACATTTCTTTTTGCTACAAGGTGAATACTATAATATGAACTTCGGCTTGCAGAATATAGAGATGTCAGAGTATTATGATCCAAAGCTTATTGATGAAGTTCCTACCCACTTATGTGACTCAGTAGATTATCCAGTACTAGATCAAAGTCTATTCATAGCATGA 1737 0.3869 MDNGCFPSPRLDAFPAGLRVLVVDDDLTWLRILEKMLKKCFYEVTTCCLATDALKKLRERRDAYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESLEGFEGFHLNGSDHSDDTNLFAVEDMTSMKKRKDIDNKHDDKEFGDQSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPRLSRENVASHLQKYRLYLGRLQKENDQKSSSSGTKQSDSPSKDPGSFSFLNSTNKQQNDVEIDSTKYSDGTLQLQMDATSHDGDLKGIVSELTAEKRRALMTSDIPDPKIRMSSHMGLNQPFTSVESEANHAVFDCTIPTQYSWSEVPKRSLEEKQETLIQLKDSFSQLPLHGMQHHIQVDQSQSISSSINSSPSVTQEVASCLETKPSYADYKSDYISPVNSVGSAVDTFPIQSKSLMVNDQSPEPIFTSNLDLKTHGFNLECISDLEFYQRNLLLGGEVASAPLEEDLHFFLLQGEYYNMNFGLQNIEMSEYYDPKLIDEVPTHLCDSVDYPVLDQSLFIA* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01393 578 CDD REC_typeB_ARR-like 20 134 - -
Rops2g01393 578 SMART REC_2 18 130 IPR001789 GO:0000160
Rops2g01393 578 MobiDBLite consensus disorder prediction 258 297 - -
Rops2g01393 578 MobiDBLite consensus disorder prediction 255 297 - -
Rops2g01393 578 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 293 IPR045279 GO:0009736
Rops2g01393 578 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Rops2g01393 578 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Rops2g01393 578 Gene3D - 194 257 - -
Rops2g01393 578 FunFam Two-component response regulator 194 257 - -
Rops2g01393 578 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Rops2g01393 578 SUPERFAMILY CheY-like 17 143 IPR011006 -
Rops2g01393 578 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Rops2g01393 578 Gene3D - 18 183 - -
Rops2g01393 578 SUPERFAMILY Homeodomain-like 196 254 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01393 Rops-Chr2 19867652 19871915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01393 11 264 Response Regulator Gene Family AT2G25180 55.039 2.92e-82 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Rops2g01393 Response_reg 7.7e-23 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01393 2 19867652 19871915 Rops2g01393 2 19867652 19871915 ECH
Rops11g03761 11 71327887 71331822 Rops2g01393 2 19867652 19871915 PCT