Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00171 ATGGAGAGAGATTTCATGGGCCTGAGCTCAAAAGAACCACTCTCTGTGGTTAAGGAGGAAATGAACCATGATGGGTGCAAAGACTCAGGCTTCACGAAGGGTTCTGTTGCACAATGGCCCTTCTCGAACAAAGTCTCTGCTCTTCCACAGTTGATGTCTTTCAAGGTTTCTCAAGATGATAAGACTAAGAAGATGCCTTATCCCATGACATCTGCTGGGTTTATGACCGTCTTAGGTCCAGATGCATTTGACTCTACTAAAAAACGCTCTGCTGGTGAACCCCAGAAATCTTTCAATCAAGATGGGCGAGGTGTTTCTCATTTTTCACTGACTTCGTATCCTGTACAACATGATGTGAAGATGTTTTCAGTTTCTTTGGGGAACCCGTTCATGAAGAATCACTTTGCAGCTGCTGGTCAGAATATGAATGGTACTAATGTGAAGCAGCCACTGCTTGGGGGAATACCTGTTACAACGCCTTATTCATCTATTCCCACCATTGGTGCTGTTGCTGGGATGACTGAATCATGTGTGAAACCATCAGCGCCTTCTGCCCAACTTACCATCTTCTATGATGGTACTGTCAATGTCTTTGATGATATCTCTGCTGAGAAGGCACAAGCTATCATGTTGCTGGCTGGCAATGGCTTGTCTGTGGCTTCTAACATGGCACACCCAGTTCAGGCACCCTGCACTAAGTTGGCAACTGGTGATGGTGTGCCTGTGAGTCAGCCTGCAAAAACACCACCCGGCTCTGGTCTTTCAAGTCCTTTATCTGTTTCATCGCATGCTGGTGCACAGTCAGGGAGTGGATCAACTAGCACTGATGAATTTCTGGCAGCTAAAACAACTGGAGTTCCCACAACTCCTGTTAGCAATGTGGAACCTCCAAAAGTAGTCAATGCAGTCACTATGTTGACCTCAACTGTGCCTCAGGCTCGGAGAGCATCCTTGGCTCGATTTTTTGCATCACGCAAGGAGAGGGTGATGAATGCTGCACCATATAACCTCAACAAGAAGTCTGAAGAGTGTACCACTGCATAA 1044 0.4636 MERDFMGLSSKEPLSVVKEEMNHDGCKDSGFTKGSVAQWPFSNKVSALPQLMSFKVSQDDKTKKMPYPMTSAGFMTVLGPDAFDSTKKRSAGEPQKSFNQDGRGVSHFSLTSYPVQHDVKMFSVSLGNPFMKNHFAAAGQNMNGTNVKQPLLGGIPVTTPYSSIPTIGAVAGMTESCVKPSAPSAQLTIFYDGTVNVFDDISAEKAQAIMLLAGNGLSVASNMAHPVQAPCTKLATGDGVPVSQPAKTPPGSGLSSPLSVSSHAGAQSGSGSTSTDEFLAAKTTGVPTTPVSNVEPPKVVNAVTMLTSTVPQARRASLARFFASRKERVMNAAPYNLNKKSEECTTA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00171 347 ProSiteProfiles Tify domain profile. 180 215 IPR010399 -
Rops2g00171 347 MobiDBLite consensus disorder prediction 235 277 - -
Rops2g00171 347 Pfam tify domain 182 214 IPR010399 -
Rops2g00171 347 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 101 343 IPR040390 -
Rops2g00171 347 MobiDBLite consensus disorder prediction 248 277 - -
Rops2g00171 347 Pfam Jas motif 311 335 IPR018467 -
Rops2g00171 347 SMART tify_2 180 215 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00171 Rops-Chr2 2494185 2497378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00171 39 344 Tify Gene Family AT3G17860 37.695 3.72e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Rops2g00171 tify 3.6e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00171 2 2494185 2497378 Rops2g00171 2 2494185 2497378 ECH