LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g00156	ATGGCTACTTCGAAGGTGGTAATGTCTTCATTGACCCACATGCGTCCACTAACATGCGCCGCTTCAGCATCATCAGCATCACGAATAGTGCCCCACCCACCTGACCTCATCAAGTGGGTAACCAGAGAAGGTGGGTTCGTACATCGCGCGTTGAAGATAGCCCAACCTGACTCCAATGGACTCGGACTGGTGGCTAAGGAAGAAATCCCAGTTGGCACTGACCTTATTATTCTCCCCCACCACCTTCCTTTGCGTTTTGAATCTCATGACTCAATCCTGCTTGAATTGGCACGCCAAGTTCCTGAGGAACTATGGGCAATGAAATTGGGTTTGAAGCTTCTTCAAGAAAGAGCGAAAGTTGGATCATTTTGGTGGCCATACATCAGCAATCTCCCTGAAACATACAGTGTGCCTATCTTCTTTCCTGGGGAAGATATAAAGAATTTGCAGTATGCTCCTCTTCTTCACCAGGTAAACAAAAGATGCCGATTTCTTCTTGATTTTGAAAAAGAAGTCAAGCATGCCTTAGTCAGTGTTACACGAGATAAGCATCCTTTTGGTGGCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCGATGTCTGCAGTCTCATCTCGAGCATTCCGGTTACATGGTAACAAGCATCCAAATGGAGTGCACATTGACATTCCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTCACTCCAAATGCTAGAATTGTTCAGGAACAAGATACCAGTAGCACAGAGATGCAAGTGAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCTTTGTTACTTTGCTATGGTTGTTTAAGCAATGATCTTTTCCTTCTTGATTACGGATTTGTGATACACTCAAATCCCTATGACTGTATTGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTTCTTCACCAAACTTCTCGACACCTGCTCCCTGGCAGGAACTGATTTTATCGGAGCTAAATCTAGCTGGAGAAGCTCCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAATGATAGAGGGCCGCTTGTTGGCTGCATTGAGAGTACTCCTTGCAAGTGACATGGAAACTGTACAAAAGTTTGACCTCAGCACGCTCAAGTCTTTAGATGCTGAGGCTCCTCTCGGTGTTGCAAATGACATTTCTGTGTTTCGTACCCTAATTGCTCTGTGTGTCATTGCATTGGGACACTTCCCCACCAAAATAATGGATGATGAATCACTGTTGAAGCAGGGTGCTTCAGGTTCAACTGAGTTAGCCATTCAGTTCAGAATCCAAAAGAAATCTGTAATTATAGATGTAATGAAAAATCTATCAAGGAGGGTAAAGCTTCTCTCATCAAAGGAAACAGTTACTGCCGAAGGCTAA	1413	0.443	MATSKVVMSSLTHMRPLTCAASASSASRIVPHPPDLIKWVTREGGFVHRALKIAQPDSNGLGLVAKEEIPVGTDLIILPHHLPLRFESHDSILLELARQVPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYSVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEKEVKHALVSVTRDKHPFGGQEVDASSLGWAMSAVSSRAFRLHGNKHPNGVHIDIPMMLPLIDMCNHSFTPNARIVQEQDTSSTEMQVKVVAETAIKEDDPLLLCYGCLSNDLFLLDYGFVIHSNPYDCIELKYDGALLDAASMAAGVSSPNFSTPAPWQELILSELNLAGEAPDLKVSLGGQEMIEGRLLAALRVLLASDMETVQKFDLSTLKSLDAEAPLGVANDISVFRTLIALCVIALGHFPTKIMDDESLLKQGASGSTELAIQFRIQKKSVIIDVMKNLSRRVKLLSSKETVTAEG*	471

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g00156	470	Pfam	Rubisco LSMT substrate-binding	325	445	IPR015353	-
	Rops2g00156	470	FunFam	Histone-lysine N-methyltransferase setd3	3	288	-	-
	Rops2g00156	470	Gene3D	set domain protein methyltransferase, domain 1	3	288	-	-
	Rops2g00156	470	Gene3D	-	326	466	IPR036464	-
	Rops2g00156	470	CDD	SET_LSMT	50	289	-	-
	Rops2g00156	470	FunFam	SET domain containing protein	311	464	-	-
	Rops2g00156	470	SUPERFAMILY	SET domain	31	293	IPR046341	-
	Rops2g00156	470	SUPERFAMILY	RuBisCo LSMT C-terminal, substrate-binding domain	285	464	IPR036464	-
	Rops2g00156	470	SMART	set_7	49	281	IPR001214	GO:0005515
	Rops2g00156	470	PANTHER	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	28	432	-	-
	Rops2g00156	470	ProSiteProfiles	SET domain profile.	49	275	IPR001214	GO:0005515
	Rops2g00156	470	Pfam	SET domain	60	275	IPR001214	GO:0005515

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Rops2g00156		SET	1.4e-13	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops2g00156	2	2282952	2283281	Rops2g00156	2	2282952	2283281	ECH