Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00138 ATGGCAAAAGAGAAAGATGAAGATGGCGTTCACAACAGTGGGAAGAGGTTGAAACGCGTGAGGAATGAAAAGGAGCAAGTTCAAACAGAGGATGATGCAGTGGAAGAGGAAAGTGAGCTTCCCTTAAAGCCAGGACTCTTCTACTACCCAACAACACCTACCTCCTTTGTTGTTTCAGATGCACTTGAACCTGATTTCCCTATCATCTATGTCAACAAGGTGTTTGAAATCTCCACTGGTTATCGTGCTGATGAGGCCCTTGGTCGCAACTGTCGGTTCTTACAGTTTAGGGATCCTCGAGCTCAGAGGCGGCACCCTTTGGTGGATCCTGTTGTTGTGTCCGAGATTAGAAGATGTCTTGAGGAAGGTATTGTGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTGAACAGACTGAGACTTGCACCAATTCATGATGATGATGGAATCGTGACGCATGTAATAGGAATCCAGCTATTTTCTGAGGCAAATATAGATCTGAACAGTGTCTCGTATCCAGTTTTCAGAGAGACTTGCAATCAAGATTTTGATAAGAGTGGTAAATATTGTCCTAAGGGTGGACAATCATTATACAGTCAGCACCAAAAGATGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTGGCTCACAACATTTTGTCACGCTTGACACCAAGGGATGTTGCATCCATTGGGTCTGTTTGCAGGAGGATCCGTCAATTAACAAAAAATGAGCATGTCAGGAAGATGGTATGTCAAAATGCGTGGGGCAAAGAAGTGACGGGTGCATTGGAACTGATGACTAAGAAGTTAGGATGGGGTCGTCTGAGTCGAGAACTTACTACTCTTGAGGCTGTTTGTTGGAGAAAAATGACAGTTGGAGGTGCAGTGGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGTAGGGAATCGACTCGTATTGTTTGGAGGTGAAGGAGTGGATATGCAACCTATGGATGACACTTTTGTTCTAAATCTTGATTCTAAAAATCCAGAATGGCGGAGGGTTAGCGTGAAATCATCCCCACCTGGAAGATGGGGTCACACACTCTCATGCTTAAATGGTTCTTGGTTGGTGGTTTTTGGCGGATGTGGTAGACAAGGATTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCAACATGGAGGGAAGTCTGTGGTGGAACCCCACCACTTCCTAGATCTTGGCACAGCTCTTGCACAATTGAAGGCTCCAAATTGGTTGTATCAGGTGGTTGCACAGATGCTGGGGTACTTCTTAGTGACACATATTTACTTGATCTCACAACAGATAATCCAACATGGAGAGAAATTCCAACATCATGGGCTCCTCCTTCTCGGTTGGGACACTCACTCTCAGTCTATGGAAGGACAAAAATTCTCATGTTTGGTGGACTTGCCAAGAGTGGACACTTGAGATTACGATCAGGTGAGGCTTATACAATTGATTTAGAAGATGAACAACCACAATGGAGGCAACTAGAATATAGTGCATTCACGGGATTAGCGAGTCAAAGTGCTGTTGTTCCTCCTCCTAGACTAGATCATGTTGCTGTCAGCATGCCTTGTGGGAGGATCATCATATTTGGAGGCTCCATTGCAGGTCTTCACTCACCATCTCAGCTCTTTCTCTTGGACCCTTCGGAAGAGAAACCATCATGGAGGATCCTCAATGTTCCAGGGCAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTCTTGGTATTGGGTGGACATACTGGGGAGGAATGGATACTGAATGAGTTGCATGAGTTATGCTTGGCAAGTAGACAGGACTCTGACCTGTGA 1878 0.4526 MAKEKDEDGVHNSGKRLKRVRNEKEQVQTEDDAVEEESELPLKPGLFYYPTTPTSFVVSDALEPDFPIIYVNKVFEISTGYRADEALGRNCRFLQFRDPRAQRRHPLVDPVVVSEIRRCLEEGIVFQGELLNFRKDGTPLVNRLRLAPIHDDDGIVTHVIGIQLFSEANIDLNSVSYPVFRETCNQDFDKSGKYCPKGGQSLYSQHQKMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGALELMTKKLGWGRLSRELTTLEAVCWRKMTVGGAVEPSRCNFSACAVGNRLVLFGGEGVDMQPMDDTFVLNLDSKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQLEYSAFTGLASQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00138 625 Gene3D - 511 623 IPR015915 GO:0005515
Rops2g00138 625 FunFam Adagio protein 1 45 174 - -
Rops2g00138 625 CDD PAS 52 162 IPR000014 -
Rops2g00138 625 FunFam Putative LOV domain-containing protein 489 621 - -
Rops2g00138 625 FunFam Putative LOV domain-containing protein 283 488 - -
Rops2g00138 625 SUPERFAMILY F-box domain 206 286 IPR036047 GO:0005515
Rops2g00138 625 Gene3D PAS domain 49 174 - -
Rops2g00138 625 SUPERFAMILY Kelch motif 293 511 IPR015915 GO:0005515
Rops2g00138 625 Pfam PAS domain 62 162 IPR000014 -
Rops2g00138 625 Gene3D - 283 510 IPR015915 GO:0005515
Rops2g00138 625 Pfam Kelch motif 530 577 IPR011498 GO:0005515
Rops2g00138 625 Pfam Galactose oxidase, central domain 306 356 - -
Rops2g00138 625 SUPERFAMILY PYP-like sensor domain (PAS domain) 63 163 IPR035965 -
Rops2g00138 625 Coils Coil 10 37 - -
Rops2g00138 625 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 36 619 - -
Rops2g00138 625 MobiDBLite consensus disorder prediction 1 38 - -
Rops2g00138 625 Pfam Galactose oxidase, central domain 420 471 - -
Rops2g00138 625 Pfam Galactose oxidase, central domain 371 418 - -
Rops2g00138 625 NCBIfam PAS domain S-box protein 67 162 IPR000014 -
Rops2g00138 625 Gene3D - 205 256 - -
Rops2g00138 625 Pfam F-box domain 212 249 IPR001810 GO:0005515
Rops2g00138 625 MobiDBLite consensus disorder prediction 1 28 - -
Rops2g00138 625 CDD F-box_AtADO-like 211 257 - -
Rops2g00138 625 SUPERFAMILY Kelch motif 512 616 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00138 Rops-Chr2 2093659 2096831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00138 51 164 AGC Kinase Gene Family AT5G58140 43.860 6.68e-21 95.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00138 2 2093659 2096831 Rops2g00138 2 2093659 2096831 ECH