LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g00128	ATGGTGAAATCGAGCGATAATGGTTCTTCTTCTGTGCCTCCTTTCTTGAACAAGTGTTACGATATGGTGGAAGACCATTCCACCGACTCCATCATATGTTGGAGTGAAGGCGGTGACAGTTTTGTAATCTCCGACATCACCCAATTCTCCGTCACACTCCTCCCCACCTATTTCAAGCACAACAATTTCTCCAGCTTCATCAGACAACTCAACATCTATGGTTTCAGGAAAATTCATACGGATCGCTGGGAATTTGCCAATGAACATTTTGTTAGGGGTCAAAAGCATTTGTTGAAGAATATACGTAGAAGGAAACATCCTCACGATGCAGAGCAGCAGAAAGCATTGCCACAGCACGACAATAGTGATGAACCATCACAAGAAGCACCAAATCATGCCCTATGGAAAGAAGTTGAGAATCTTAAATCCGATAAAAATTCCCTTGCGCAGGAGTTGGTCAAACTTAGGCAACATCAGGAATCTTCTGAGAGTAAGTTGCTGGTCCTGAGTGATCGCCTTCAAGGAATGGAGAAGCATCAGCAGCAGATGTTGTCATTCTTAGTCATGGTTGTGCAAAGCCCTGGGTTCATGGTTCAGCTGCTTCAGTCTCAGGAAAATAACTGGCGTTTAGCTGAACCAGGGAATATGTTGGACCTAGGTAAACAAGATAACAAACCAGTTGCTTCTGATAGGATGATTGTAAAGTATAAACCACATGTAGGTGAAAAACTAAATCCTGTTGTTCCACTATCTCCTGGTTTCGATAGGCAACTCGATAAGCAACCAGAACCTGAGTTTTCTGCTGATGGGTTCAAAGACTTGTGCATCAGTTCTGAATTCTTGAAAGTGCTTCTGGATGAGAAATTGAGTCCATTAGATAATCATTCTCCATTTCTGCTTCCTGATTTACCTGATGACGGTTCATGGGAACAGCTTTTTCTAGATAGTCCTTTCAGGGGAAACATTGAAGATACTGATCATGAAAGTGAGGAGCTTCCTGCTGGTGAAATGGAGATGGAACCCACTATACCTGAAACTCCAAATGAAAAATCTCAGGCTTTTGAATCGATGATTGTAGAAATGGAGAAAGCTCTAGCGTGA	1101	0.4242	MVKSSDNGSSSVPPFLNKCYDMVEDHSTDSIICWSEGGDSFVISDITQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIHTDRWEFANEHFVRGQKHLLKNIRRRKHPHDAEQQKALPQHDNSDEPSQEAPNHALWKEVENLKSDKNSLAQELVKLRQHQESSESKLLVLSDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLQSQENNWRLAEPGNMLDLGKQDNKPVASDRMIVKYKPHVGEKLNPVVPLSPGFDRQLDKQPEPEFSADGFKDLCISSEFLKVLLDEKLSPLDNHSPFLLPDLPDDGSWEQLFLDSPFRGNIEDTDHESEELPAGEMEMEPTIPETPNEKSQAFESMIVEMEKALA*	367

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g00128	366	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	6	231	IPR027725	-
	Rops2g00128	366	PRINTS	Heat shock factor (HSF) domain signature	66	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Rops2g00128	366	PRINTS	Heat shock factor (HSF) domain signature	15	38	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Rops2g00128	366	PRINTS	Heat shock factor (HSF) domain signature	53	65	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Rops2g00128	366	Pfam	HSF-type DNA-binding	15	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Rops2g00128	366	ProSitePatterns	HSF-type DNA-binding domain signature.	54	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Rops2g00128	366	FunFam	Heat shock transcription factor 1	8	105	-	-
	Rops2g00128	366	Gene3D	-	7	105	IPR036388	-
	Rops2g00128	366	SMART	hsfneu3	11	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Rops2g00128	366	SUPERFAMILY	"Winged helix" DNA-binding domain	10	104	IPR036390	-
	Rops2g00128	366	Coils	Coil	138	158	-	-
	Rops2g00128	366	MobiDBLite	consensus disorder prediction	104	129	-	-
	Rops2g00128	366	MobiDBLite	consensus disorder prediction	104	118	-	-
	Rops2g00128	366	MobiDBLite	consensus disorder prediction	321	350	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g00128	Rops-Chr2	1913003	1915758	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g00128	1	319	HSF	AT1G67970	50.000	1.10e-91	278

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Rops2g00128		HSF_DNA-bind	1.6e-31	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops2g00128	2	1913003	1915758	Rops2g00128	2	1913003	1915758	ECH