Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00189 ATGGGCAAGGGTCATATGGGGTGGTTCTTGTTCCTGTTCTGTTCTATGCTTTTTGTTGTTCTGGCTTCTGGGTCATCAAGAAACTTGCCCATCATAGCCTTTGATGAAGGGTACACACCTTTGTTTGGGGACAATAACTTGGTCATACATAGGGATGGGAAATCGGTTCATCTTTCACTTGATGAGAGGACAGGTTCTGGATTTGTGTCTCATGATCTTTACCTTCACGGGTATTTCAGTGCTTCGATTAAGTTGCCAGCTGATTACACTGCTGGGGTGGTGGTTGCATTTTATATGTCAAATGGTGACTTGTTCCAGAAGAACCATGATGAAATAGACTTTGAATTTTTGGGAAACATTAGAGGCAAAGATTGGAGGATTCAGACTAATGTTTATGGCAATGGAAGTACTAGCATTGGCAGAGAAGAAAGATATGGTCTCTGGTTTGATCCTTCTGAGGATTTCCATCAGTACAGTATTCTCTGGACAGATTCTAAGATAATATTTTATGTAGATAATGTTCCTATTAGAGAAGTGAAAAGGACAGAATCTATGGGAGGAGATTTCCCTTCAAAGCCAATGACTTTGTATGCCACCATATGGGATGCATCTGATTGGGCTACCAATGGAGGCAAATACAGAGTAAATTACAAATATGCACCCTATGTTGCTGAGTTCTCAGACCTTGTCCTGCATGGTTGTGCAGTTGATCCAATTGAGCATGTGGCCAAGTGTGACAGTGCTCAAAGTTCTGATGCAGTCCCTTCTGGTATCACACCGGTACAAAGAATTAAAATGGAGAACTTTAGGTTGAAGCACATGACATACTCTTATTGTTATGACAGAATAAGATACAAAGTCCCTCCACCAGAGTGTGTGATCAATCCACGACAAGCTGAAAGGCTAAGAAAATTTGATCCTGTCACATTTGGTAATGGTAGGCACCACCATGGAAAAAGACACCATCACAGCAGAGGCAACCAGGCAGAGGCTGCTTCATTTTAA 1005 0.4169 MGKGHMGWFLFLFCSMLFVVLASGSSRNLPIIAFDEGYTPLFGDNNLVIHRDGKSVHLSLDERTGSGFVSHDLYLHGYFSASIKLPADYTAGVVVAFYMSNGDLFQKNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTSIGREERYGLWFDPSEDFHQYSILWTDSKIIFYVDNVPIREVKRTESMGGDFPSKPMTLYATIWDASDWATNGGKYRVNYKYAPYVAEFSDLVLHGCAVDPIEHVAKCDSAQSSDAVPSGITPVQRIKMENFRLKHMTYSYCYDRIRYKVPPPECVINPRQAERLRKFDPVTFGNGRHHHGKRHHHSRGNQAEAASF* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00189 334 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 24 226 IPR000757 GO:0004553|GO:0005975
Rops1g00189 334 PIRSF EndGlu_transf 4 297 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops1g00189 334 MobiDBLite consensus disorder prediction 309 334 - -
Rops1g00189 334 CDD GH16_XET 32 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops1g00189 334 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 296 IPR013320 -
Rops1g00189 334 FunFam Xyloglucan endotransglucosylase/hydrolase 21 294 - -
Rops1g00189 334 Pfam Glycosyl hydrolases family 16 37 218 IPR000757 GO:0004553|GO:0005975
Rops1g00189 334 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 33 292 IPR044791 GO:0004553
Rops1g00189 334 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 256 292 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Rops1g00189 334 Gene3D - 21 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00189 Rops-Chr1 5742911 5745760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00189 11 333 Glycoside Hydrolase AT1G14720 70.154 1.90e-172 480
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00189 1 5742911 5745760 Rops1g00189 1 5742911 5745760 ECH