Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00183 ATGATTAGAGGTAGTAAAGATCTTCTTCTCAATGGTGTTGACTCTGAGGGAGAGAACTCAAAGAGCAAAGGGTCACAAAAGCATGAGCAAGAAGAGAAAAAACTGAGTTATCAACAAAAAAGTGTTGATGGGTTTCAGTCAATTGCCATAAAGGTTGGGACTTCAAGTTTGCAAGAGTTGACCCTCAGCTACCTCTGTGATAACCCAAAATTGGGTCTTGTTGAGAAAGATAGAAATTTGCTGAATTCATTGGAAAAAGTGAGTTTCAAAGGTAAAGAAGTTGTCAATTCTGAGAATGCAAACCATGATGAGAAATGGGTAGAGAGAGATTTTTTGAGTTTGAGTGAAAATACTAGGGAGAATTCTTCAAAGAGATCAATTGATGAAGAAGAGGGCGAAAGGGAAGAAGATAAGGGCAAGAAGCAGAAGCTTGAGACACTTAATCTCTCTCTTGCTTTGCCTGATGTGTCACTTTCTCTCACAGCTTCAAATGCTTTACAAAATGGAGATGCTGACCACCAACCTGTTAGGCCGAAGCCTAGCATGCCATCAACAACTACCATCAATTCATGTTCAAATGATCATACAGCAGCTTCTCTATCATACTCTTATTCTCACCCCTTCTCACACAACCCAAGTTGCTCACTTACCTATAATTCAACAGAGAATTTTGAGTATTCAGTTAGCAAAGATGATCAAATTTGGTACTGTGGGGAGGGGACTAATGGATCAGTTCATAGTAGGTTCAAGCCAATAGGAGACGGGGTTGCTTTGACCAATCATGGTGGTGGGATCAATTCTTTTATGCAAGGAAATAGTCACTATAAAACTACTAGTTCAGATAACCATTCTTTTTTCCCTTCAGAATTGCCTTCTAGGCCAAGATTTGAAGCTCAGTCAGAGGGCTCAAGGGGAAAGAATTCTGAAAATCTGAGAGGCTTGGAAGGTGTTGATGGTGGGAAAATAGTGAAGCTTTCTAGACCAGAGAGAATTCTAAGAGAAATTGTTTCTGAGTCTATCCCTTCCATAGCATTGATATTTCAGGAGTTTACTGATGAAGTCATGACATCAATTAAGGAATACTTGAAAAACCTCATTGAAATGCCAGAGAAGAAAGAAGAATTAGTGAACCTTCAGAACTGGCTTGAGAGAAGATCTGACCTTAGCAAAGAAACTCTTTCAAAGTGCCACAAAGTGCAATTGGAGATTTTAGTTGCTATCAAGATGGGGCTTGCAAGTTTCTTATCTGGTAAATTCCAATTCTCTGAGATGGTGGAGGTTTTATTGTATACAAGATGTAGGAATTTTAATTGCAAGAGCTTGCTGCCTGTTGATGACTGTGAATGCAAGATTTGCTCAGGAAATAAAGGATTTTGCAGTTCTTGCATGTGTCCTGTTTGTTTGAACTTTGATTGTGCAAGCAACACTTGTAGTTGGGTAGGTTGTGATGCTTGTTCTCACTGGTGTCATGCTGCCTGTGGCATTGAGAGGAATTTAATCAAACCTGGGCCTAGCTTGAAGGGTCCTTCAGGGACCTCTGAGATGCAGTTTCATTGTATTGGTTGTGGACATGCTTCAGAAATGTTTGGATTTGTTAAAGATGTCTTTCTGTATTGTGCTAAGGATTGGGGCCTAGAAACCTTGATGAAAGAGCTTGATTGTGTAAGGAAGATTTTCAGGGGAAGTGAAGATCGCAAGGGGAAGGAATTGCATATCAAAACGCATGATATGCTGTTGAAGCTTCAAGCTAATTTGGTATCTCCTTTGGATGCATGCAATTACATCATACGGTTTTTCAGCTATGCGGATGGCTTATCAGACTTTCCTGCTTCTGGTATATCTTCAAAGGATTTGTCAGCACCTAAGTCTAACCTTACAATGGACACAGCATCTGTTTCACAATCTACCTCTCAAATACCAAAATATACACATGACTTGAGCTATTCTATGTCAAATGATCTTCCTGAAAAAGACCTCAAAACCTCCCTTTTAAGTGAACTAAAAAATGAGTCTGATTTCCACTTGGAGGCTTTATTAAGGAAAGGTGGGGTTGAAAGCTTGGAGAGCATTGTGAGGATTAAAGAGGCAGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCAAGGAGGGAGGCAGAAGGGTTCCAGAAGATGATCAAGACAAAGATGGCACAGATGGAAGAAGAGTATACTGAAAAGCTTGGGAAACTCTGTTTGCAGGAGACAGAGGAAAGGAGGAGGAAGAAATTAGAGGAACTCAATGTCTTGAAAAGTTCCCATTTTGATTATTTCAAAATGAAGATGAGAATGCAAGATGAGATTGATGGTTTGTTGAAGAGAATGGAGGCAACAAAGCAGCAAGGGGTTTAG 2370 0.4 MIRGSKDLLLNGVDSEGENSKSKGSQKHEQEEKKLSYQQKSVDGFQSIAIKVGTSSLQELTLSYLCDNPKLGLVEKDRNLLNSLEKVSFKGKEVVNSENANHDEKWVERDFLSLSENTRENSSKRSIDEEEGEREEDKGKKQKLETLNLSLALPDVSLSLTASNALQNGDADHQPVRPKPSMPSTTTINSCSNDHTAASLSYSYSHPFSHNPSCSLTYNSTENFEYSVSKDDQIWYCGEGTNGSVHSRFKPIGDGVALTNHGGGINSFMQGNSHYKTTSSDNHSFFPSELPSRPRFEAQSEGSRGKNSENLRGLEGVDGGKIVKLSRPERILREIVSESIPSIALIFQEFTDEVMTSIKEYLKNLIEMPEKKEELVNLQNWLERRSDLSKETLSKCHKVQLEILVAIKMGLASFLSGKFQFSEMVEVLLYTRCRNFNCKSLLPVDDCECKICSGNKGFCSSCMCPVCLNFDCASNTCSWVGCDACSHWCHAACGIERNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLYCAKDWGLETLMKELDCVRKIFRGSEDRKGKELHIKTHDMLLKLQANLVSPLDACNYIIRFFSYADGLSDFPASGISSKDLSAPKSNLTMDTASVSQSTSQIPKYTHDLSYSMSNDLPEKDLKTSLLSELKNESDFHLEALLRKGGVESLESIVRIKEAEARMFQTKADEARREAEGFQKMIKTKMAQMEEEYTEKLGKLCLQETEERRRKKLEELNVLKSSHFDYFKMKMRMQDEIDGLLKRMEATKQQGV* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00183 789 Coils Coil 691 725 - -
Rops1g00183 789 CDD PHD_OBE1_like 463 522 IPR047578 -
Rops1g00183 789 MobiDBLite consensus disorder prediction 20 38 - -
Rops1g00183 789 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 20 787 IPR004082 -
Rops1g00183 789 Pfam PHD - plant homeodomain finger protein 433 557 IPR032881 -
Rops1g00183 789 Coils Coil 127 147 - -
Rops1g00183 789 Coils Coil 739 759 - -
Rops1g00183 789 MobiDBLite consensus disorder prediction 1 38 - -
Rops1g00183 789 Coils Coil 767 787 - -
Rops1g00183 789 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 346 368 IPR004082 -
Rops1g00183 789 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 685 705 IPR004082 -
Rops1g00183 789 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 424 445 IPR004082 -
Rops1g00183 789 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 543 562 IPR004082 -
Rops1g00183 789 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 470 490 IPR004082 -
Rops1g00183 789 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 724 746 IPR004082 -
Rops1g00183 789 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 385 400 IPR004082 -
Rops1g00183 789 MobiDBLite consensus disorder prediction 278 313 - -
Rops1g00183 789 MobiDBLite consensus disorder prediction 117 142 - -
Rops1g00183 789 Pfam Coiled-coil region of Oberon 653 778 IPR032535 -
Rops1g00183 789 MobiDBLite consensus disorder prediction 167 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00183 Rops-Chr1 5544463 5547824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00183 433 637 PHD Gene Family AT5G57380 24.390 2.39e-09 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00183 1 5544463 5547824 Rops1g00183 1 5544463 5547824 ECH