Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00175 ATGGGTGTTTCTGATTTAGACCAACAAAACTGGTACCTATGGTTCATTGTACAGCCACCTTCTCTTTCCTCTTACAGATATGAAGGGGGAAGAAGAAGGGGACATAGCAGCAGCTCAGAAAAACCAGGCAAAGTGAATTTCTTGCTGATGGGTCTTAGTTTGAAAATGCAGAGCCACCATCCTGTGGCTTTGAGGTTGTATGATCAAATGGGGTCTAAAAGAAAGTACACTTTCATTCAGGCTCATAGAGCTTGGTTACCAAAGTTTTTGCTGCTGTGGATCATGCTAATGGCCTTAATCAGTTGGTGCATCTATAGTAAAATGGATGATGACACTAAAGTTAGAAGGAAAGAGGTGTTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGTTGCAAGATCAGTTTAGTGTTAGTGTGAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACTTTCCATTATTACAGGACCCCTTCTGCCATTGACCAGGAAACCTTTGCTGAGTATACAGCCAGGACAGCATTTGAAAGGCCATTACTGAGTGGTGTGGCTTATGCACAAAGAGTTGTTAACTCAGAGAGAGAGAGATTTGAGAAGCAACAAGGATGGGTGATAAAGACATTGAAAAGAGAGTCTTCACTGATTAGAGATGAGTATGCACCTGTGATATTTTCTCAAGAAACTGTCTCATACCTTGAGTCTCTTGATATGATGTCTGGGGAGGAGGACAGGGAAAACATTTTAAGGGCTAGGGCTACTGGGAAAGCGGTTTTGACTAGCCCTTTCAGGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTCCCTGTGTACAAATCTAAGCTCCCTCCAATGCCAACAGTGGAAGAACGCATTGAAGCAACAGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTTGGGCAACTTGCTGGTAACCAAGCAATTTTGGTGAATGTGTATGATATCACAAACTACAGTAATCCCCTAACCATGTATGGCAACCAAAATGAAGAAGGTGACATGTCTCTAGTACATGAAAGCAAGCTTGATTTTGGAGATCCATACAGGAAACACCAGATGATATGTAGGTATCATCAGAAGGCACCAACAAATTGGATAGCTCTTACCACAGCATTCCTGTTCTTTGTGATTCTTCTATTAGTGGGTTACATTTTATATGGTGCTGGAAATCATATTGTCAAAGTTGAAGATGATTTCCATGAAATGCAGGAATTAAAAGTCCGAGCAGAAGCAGCTGATGTTGCCAAATCCCAGTTTCTAGCTACAGTCTCTCATGAAATCAGAACACCCATGAATGGCATTTTAGGAATGCTTGCTCTGCTTCTAGATACAGAATTGAGTTCAACCCAACGAGATTATGCTCAGACTGCTCAAGCATGTGGGAAGGCACTGATAACATTGATAAATGAGGTGCTTGACCGAGCTAAAATTGAAGCCGGCAAGCTAGAGCTAGAGGCTGTTCCATTTGATCTTCGTTCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAGTCTAGACACAAAGGTTTGGAGTTGGCGGTGTTTGTTTCTGATAAAGTACCAGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAATAACAAATCTTGTTGGAAACTCTGTTAAATTTACTGAACAAGGACATATATTTGTCAAAGTCCATCTAGCAGATAATAGAAAGTCCATAATGAATGGAAAACACGAGGCTTTTCTTAATGGAGAATCAGATGAAGTTTTCCATATATCTGGTGATTATCATTGTAAAACCTTAAGTGGATGTGAGGCAGCTGATGAACGGAACAGCTGGGATAATTTTAAGCATCTAATTGCCGATGAAGAATTTTGCTATGATTATTCAAGTAAAATGGTGGCCTCTTGTGAATCTTCTGAGCAAGTCACCTTGAGGGTCTGCGTGGAGGACACTGGAATTGGAATTCCTTTCTCAGCCCAGGATACGATATTCATGCCTTTTGTGCAGGCTGACAGTTCAACCTCTCGGAATTATGGTGGTACTGGAATTGGTTTGAGTATCAGTAAATGCCTGGTTGAACTAATGGGTGGTCAGATAAACTTCATAAGCCGACCTCAGGTTGGGAGCACGTTCTCGTTTACTGCAGACTTTGGAATGTTTAAGAAAAATTCGGTTAATAACATGAAGAAAGTAAATTTGGAAGATCTTCCTTCCAGTTTTAGAGGCCTGAAAGCCATAGTGGTAGATAGAAAACCGGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTAGGGATACTAGTTAAAGTTGCAAATAGCATCAGTAAGGCTGTGGCTTTATGCAGTAAAAATGGTTCTTTGACACCAGGAATGTTCCAGCCTGATATTATAATGGTTGAAAAAGACACATGGATATCTGGAGAGGATGGGGGTTTCACTGTATGGAAATTGGACTTGAAACAAAATGGACATATGTCTAAGATGCCCAAGATGATCCTTCTAGCAACCAATATTAATAACACTGAATTTGATAGAGCTAAAGCTGCAGGTTTTACTGACACCGTGATCATGAAGCCTTTGAGAGCTAGCATGGTGGCTGCTTGTCTTCAACAAGTTCTAGGGATGGGGAAAAAGAGACAGTTAGGAAAAGACATGCCTAGTGGTTCTGCTTTTCTACAAAGCCTTCTCTATGGAAAGAAAATCTTGGTGGTTGATGACAATGGGGTAAACCGGAGGGTTGCTGCAGGTGCATTGAAAAAGTTTGGAGCTGATGTGAAGTGTGCTGAAAGTGGCAAAACTGCACTTGAAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGACATTCAAATGCCCGAAATGGATGGATTTGAAGCAACAAGTCGAATTCGGATGATGGAGAGAAAAGCAAATGAGCAGATGAATGGTGAATCTGGTGAAGGAAATGCCCGGAAAAGTGAGTGGCATGTACCTATATTGGCCATGACAGCTGATGTAATCCATGCTACATATGATGAGTGCTTGAAATATGGTATGGATGGTTATGTCTCAAAACCATTTGAGGAAGAGAATCTCTATCAGGAAGTTGCAAAGTTTTTCAAATCCAAACCCATCTCAGATTCATAA 3159 0.4112 MGVSDLDQQNWYLWFIVQPPSLSSYRYEGGRRRGHSSSSEKPGKVNFLLMGLSLKMQSHHPVALRLYDQMGSKRKYTFIQAHRAWLPKFLLLWIMLMALISWCIYSKMDDDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERERFEKQQGWVIKTLKRESSLIRDEYAPVIFSQETVSYLESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPMPTVEERIEATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNYSNPLTMYGNQNEEGDMSLVHESKLDFGDPYRKHQMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLADNRKSIMNGKHEAFLNGESDEVFHISGDYHCKTLSGCEAADERNSWDNFKHLIADEEFCYDYSSKMVASCESSEQVTLRVCVEDTGIGIPFSAQDTIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGMFKKNSVNNMKKVNLEDLPSSFRGLKAIVVDRKPVRAAVTRYHLKRLGILVKVANSISKAVALCSKNGSLTPGMFQPDIIMVEKDTWISGEDGGFTVWKLDLKQNGHMSKMPKMILLATNINNTEFDRAKAAGFTDTVIMKPLRASMVAACLQQVLGMGKKRQLGKDMPSGSAFLQSLLYGKKILVVDDNGVNRRVAAGALKKFGADVKCAESGKTALEMLQLPHNFDACFMDIQMPEMDGFEATSRIRMMERKANEQMNGESGEGNARKSEWHVPILAMTADVIHATYDECLKYGMDGYVSKPFEEENLYQEVAKFFKSKPISDS* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00175 1052 CDD HATPase_EvgS-ArcB-TorS-like 547 725 - -
Rops1g00175 1052 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 542 725 IPR003594 -
Rops1g00175 1052 ProSiteProfiles Response regulatory domain profile. 909 1044 IPR001789 GO:0000160
Rops1g00175 1052 SUPERFAMILY CheY-like 907 1044 IPR011006 -
Rops1g00175 1052 Gene3D - 404 493 - -
Rops1g00175 1052 SUPERFAMILY CheY-like 748 883 IPR011006 -
Rops1g00175 1052 SMART HisKA_10 430 495 IPR003661 GO:0000155|GO:0007165
Rops1g00175 1052 PANTHER TWO-COMPONENT HISTIDINE KINASE 75 1041 - -
Rops1g00175 1052 SMART CHASE_2 157 342 IPR006189 -
Rops1g00175 1052 Pfam CHASE domain 160 340 IPR006189 -
Rops1g00175 1052 PRINTS Bacterial sensor protein C-terminal signature 687 705 IPR004358 GO:0016310|GO:0016772
Rops1g00175 1052 PRINTS Bacterial sensor protein C-terminal signature 711 724 IPR004358 GO:0016310|GO:0016772
Rops1g00175 1052 PRINTS Bacterial sensor protein C-terminal signature 670 680 IPR004358 GO:0016310|GO:0016772
Rops1g00175 1052 PRINTS Bacterial sensor protein C-terminal signature 652 666 IPR004358 GO:0016310|GO:0016772
Rops1g00175 1052 CDD HisKA 430 491 IPR003661 GO:0000155|GO:0007165
Rops1g00175 1052 Gene3D - 494 730 IPR036890 -
Rops1g00175 1052 ProSiteProfiles CHASE domain profile. 157 369 IPR006189 -
Rops1g00175 1052 Pfam Response regulator receiver domain 910 1040 IPR001789 GO:0000160
Rops1g00175 1052 FunFam Histidine kinase 4 161 376 - -
Rops1g00175 1052 Gene3D - 108 160 - -
Rops1g00175 1052 SMART HKATPase_4 542 727 IPR003594 -
Rops1g00175 1052 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 484 722 IPR036890 -
Rops1g00175 1052 CDD REC_hyHK_CKI1_RcsC-like 910 1040 - -
Rops1g00175 1052 FunFam Histidine kinase 3 903 1048 - -
Rops1g00175 1052 ProSiteProfiles Histidine kinase domain profile. 437 727 IPR005467 -
Rops1g00175 1052 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 416 496 IPR036097 GO:0000155|GO:0007165
Rops1g00175 1052 Gene3D - 903 1050 - -
Rops1g00175 1052 Gene3D - 746 886 - -
Rops1g00175 1052 Gene3D CHASE domain 161 376 IPR042240 -
Rops1g00175 1052 Pfam His Kinase A (phospho-acceptor) domain 430 495 IPR003661 GO:0000155|GO:0007165
Rops1g00175 1052 ProSiteProfiles Response regulatory domain profile. 752 882 IPR001789 GO:0000160
Rops1g00175 1052 FunFam Histidine kinase 4 402 493 - -
Rops1g00175 1052 SMART REC_2 908 1040 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00175 Rops-Chr1 5429294 5439995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00175 25 1052 Histidine Kinase Gene Family AT2G01830 70.706 0.0 1439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops1g00175 HATPase_c 6.3e-31 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00175 1 5429294 5439995 Rops1g00175 1 5429294 5439995 ECH