Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00158 ATGACAACCAGATCGAGAACTTCAAAGCGGAAGTTCCATCCGGAACCACCATCGCATATCATTAACAAGAAGCTCCGGTCGAAGCTGCCTCGCCGACGAAGACGCCAGATCTCGCCGGTGCTTCTAGCTAAAATTTCCGGCGAGAATCCTCGATTCTCCGTCGTTTCAGTGGACTCGAGCTCTGGCTCTGATTTCGCCGGCGATGAAGCTTCGTACAATTCGAGCAGAGCTTCCGCTGTATTCTCCGGCAAAGGAAGGTCGAACTCGAGGAACGGAAAATCAGAAGAAATCGAAGGTGTTCGGAAGGATGAATACGCGAATTTCTTAAGAAATCGAAGGTTCGAGAAGCGGAATGAAAATGAAGTGGAAGTGTCAGAGTCTTCGTGTGTGGAATCCAATTCTGGTTTTAACGAACGCAGCAGAAGTTTGATTTTGAAGTTCAGAAGTGGAAAAGAAAGTAAGAATCCAAAAGAAAATCATGAAGTTTCAGAAGCTCACACGAAATCGGAGATTACTTGCGCGGAGCAATTTTCCGTTGAGAATTCAAAGTCCAGTAACAAGAATTTAAACATCTCGTCGAAGTTAACCCGAAACGACGTCGTTTCAGTTAGCTCTGGTATTCGTGCGGCGTCGTTTGATGAAAAGACTGTATGCAAGGAAAACAGAGCCTCGGAATGTGAATTCTCTCAAGGTTCAAGGAACCATGAGAATTGCGCTGATTTGATAGAGCAATCGATGATGATAAAGCAGAGTTCCGATAATTCCGTCGCTGATTCTGATCTTGCTTGCTCTGAGCAATTGCGATTCTCGTATGATGACGATGAATCGGAGTACTATTCCAGCCAGGAAACTGCGTTCTCTGATCTTCACTCTGAGATTTTCCGTGAAAGTTCAGAGTATGAGCTTTCAGATTACACTCCGTCACTGTTCGTAGATTCTGGAAGCCAGTTTTCTCAAGGATCCGTTGGAGAAACTCCTTCGCCAACTTATGCTCTGTTCCTTCAATACCGCAAGGAATTCTGCACACTAGCTTCTCCAGTTAATGCTTCAACCGTTGAAGATGATGTTTCTCTTCACATCAAATTTGTTAGGTTCGAAAATTTGGATGACGAAGACAGCTACCAGATGTTGAGAAAGAGAGAAAGGAGGCAAGTTTTCCTGTGGAATTACGCTGAAGGAGATTTCGGTGACCTCATGCTTCAGCAACGCTCGCAAATGGTTCACTGGATCGTTGAGCAATCTTATCGAAAACAGCTTCGACAAGAGACATTGTTTCTTGGAATCAGCCTACTTGACCGTTTCCTGAGCAAAGGATACTTCAGAGCCAGAAGAAACCTTCAAATTGTTGGAATAGCCTGCCTCACGTTAGCCACCAGGATCGAAGAAAACCAACAATATAACAGGTTCTACCTAAAAGCTGCTAATGCTGATGCAGTTGTAGAGAAGAAGGTCAAGTACCTAGCAGTGATGGCACTGTCAGCTCATGAGCAGCTTTGCTACTGGCCCTCGACAATTGCTGCTGCACTTGTAATCCTGGCTTGTCTAGAACTCAATCAAATTGCATCCCACAGAGTCATAGGGGAAGCTAAGAACTTGCAATTGGAAAACAATCCAAAGCAAGACATTCATGACAAACACATATAG 1644 0.4453 MTTRSRTSKRKFHPEPPSHIINKKLRSKLPRRRRRQISPVLLAKISGENPRFSVVSVDSSSGSDFAGDEASYNSSRASAVFSGKGRSNSRNGKSEEIEGVRKDEYANFLRNRRFEKRNENEVEVSESSCVESNSGFNERSRSLILKFRSGKESKNPKENHEVSEAHTKSEITCAEQFSVENSKSSNKNLNISSKLTRNDVVSVSSGIRAASFDEKTVCKENRASECEFSQGSRNHENCADLIEQSMMIKQSSDNSVADSDLACSEQLRFSYDDDESEYYSSQETAFSDLHSEIFRESSEYELSDYTPSLFVDSGSQFSQGSVGETPSPTYALFLQYRKEFCTLASPVNASTVEDDVSLHIKFVRFENLDDEDSYQMLRKRERRQVFLWNYAEGDFGDLMLQQRSQMVHWIVEQSYRKQLRQETLFLGISLLDRFLSKGYFRARRNLQIVGIACLTLATRIEENQQYNRFYLKAANADAVVEKKVKYLAVMALSAHEQLCYWPSTIAAALVILACLELNQIASHRVIGEAKNLQLENNPKQDIHDKHI* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00158 547 Pfam Cyclin, N-terminal domain 373 466 IPR006671 -
Rops1g00158 547 PANTHER CYCLINS 299 514 IPR039361 -
Rops1g00158 547 SUPERFAMILY Cyclin-like 466 519 IPR036915 -
Rops1g00158 547 Pfam Cyclin, C-terminal domain 467 519 IPR004367 -
Rops1g00158 547 SUPERFAMILY Cyclin-like 368 467 IPR036915 -
Rops1g00158 547 Gene3D - 463 538 - -
Rops1g00158 547 Gene3D - 386 462 - -
Rops1g00158 547 ProSitePatterns Cyclins signature. 403 434 IPR006671 -
Rops1g00158 547 SMART cyclin_7 408 489 IPR013763 -
Rops1g00158 547 MobiDBLite consensus disorder prediction 8 22 - -
Rops1g00158 547 Gene3D - 374 385 - -
Rops1g00158 547 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00158 Rops-Chr1 4820843 4827873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00158 372 462 Core Cell Cycle Gene Families AT1G76310 37.363 7.74e-12 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00158 1 4820843 4827873 Rops1g00158 1 4820843 4827873 ECH