Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00155 ATGCTCTCCACTCCATTGTTGCTCATCACAGATTTGACACCTGCTCTTCTTGCCATTTCATGCTTTGTAATTTCTCATTCACTCAATTCAGGACTAGTATTAGAGGACCCAGAACTCAAAACACAGCCTTGTTCACTTCACACTCTTTGTTCTTTGCCCATTTTGTTGATTTGGATTTGCCCCTTTGGGTTTAATAGGTTGTGGACCTTGTTTCTTGGGAGTATTGGGATGGTGTCAAGATCATATTCAAATCTATTAGAACTGGCCTCTGGTGAGGCTCCATCATTTGGGCTCATGAACAGGAGAATTCCAAGGATTATGACTGTGGCTGGGTTGATATCTGATGTTGATGATGATACAGTGGAGAGTGTGTGCTCTGATCGGTCTTCTTCGTCGGTACACCGAGACCGGATCATTATAGTGGCTAATCAGCTCCCTATAAGGGCTCAGAGGAAGCCAGATGGTAATAGGAATTGGTCTTTCAATTGGGATGAAAATTCACTTCTTCAATTGAAGGATGGATTAGGGGATGATGATATTGAAGTTATTTATGTTGGATGCCTTAAGGAAGATGTGCATCCAAATGAACAGGATGAGGTTTCACAGATACTTTTTGAGAATTACAAGTGTGTCCCAACCTTTCTACCACCTGATCAGTTTACTAGGTACTATCATGGGTTTTGCAAACAACAGTTGTGGCCACTGTTTCATTACATGTTACCTTTGTCACCAGAACATGGTGGTAGGTTTAATAGGTCACTCTGGCAAGCTTATGTCTCAGTGAATAAAATTTTTGCAGATAGGATTATGGAAGTTATTAACCCAGAAGATGATTTTGTGTGGATACATGATTATCATCTGATGGTGTTACCAACTTTCTTGAGGAAGAGATTTAACAGAGTGAAACTTGGATTCTTCCTCCATAGCCCATTCCCTTCATCAGAAATATATAAAACATTGCCTATTAGGGAAGAGCTCTTGAGAGCCCTCCTTAATTCAGATTTGATTGGGTTCCACACTTTTGATTATGCGCGGCATTTCCTCTCCTGTTGTAGCCGGATGCTTGGTCTTACCTACGAATCCAAGCGGGGTTATATTGGGCTTGAGTATTATGGTAGGACTGTTAATATCAAAATTCTTCCTATTGGTATACACATGGGTCAGCTTCAATCAGTTCTGAGTCTGCCCGAGACTGAAGAAAAAGTTTGTGATCTCATTAGACAGTTTTCTGATCAAGGCAGGACAATGTTGCTTGGGGTGGATGACATGGATATTTTTAAGGGAATAAGTTTGAAGCTATTTGCCATGGAGCAGCTTCTCATTCAGCACCCTGAATATCAGGGACAGGTAGTACTGGTCCAGATAGCTAATCCTGCTAGAGGAAGAGGGAAAGATGTGAAAGAAGTGCAAACTGAGACAAAGGCCACAGTGAAACGGATTAATGAAACATTTGGGAAACCCGGGTATGATCCTGTTATTCTGATTGAGGAGCCACTCAAGTTTTATGAGAGAGTTGCTTACTATGTTGTTGCTGAGTGTTGTTTAGTCACTGCAGTAAGGGATGGAATGAATCTTATACCATATGAATATATAATCAGTCGTCAAGGAAATGAAACGTTGGATAAAGTTTTGGGGCTAGCTTCATCCCCTAAGAAAAAAAGCATGTTAGTTGTGTCTGAGTTCATTGGCTGTTCCCCATCTTTAAGTGGAGCAATCAGAGTGAACCCATGGAATATTGATGCAGTAGCAGAAGCCATGGACTCTGCCCTGGGAATGGCTGATTCAGAGAAACAGCTTAGGCATGAAAAGCATTATAGATATGTTAGTACTCATGATGTTGGGTACTGGGCTCGAAGCTTCTTACAAGATTTGGAAAGGGCTTGTAGTGATCATGTACGACGAAGGTGGTGGGGAATTGGGTTTGGATTAAGTTTTAGAGTTGTAGCACTTGATCCAAACTTTAGGAAGCTCTCAATGGAACACATAGTTTCAGCTTACAAGCGGACTACAACTAGGATGATCCTTCTAGACTATGATGGTACGCTCATGCCTCAGGCTTCCATTGATAAAAGCCCAACCAGTAAATCCATTGAAATTCTTAATAGTTTGTGTAGTGATAAAAAGAACATGGTATTTCTTGTTAGTGCTAGAAGCCGAAAGACACTTTCTGAATGGTTTTCTCCTCTTGAGAATCTGGGAATTGCAGCTGAGCATGGTTACTTTCTACGGATGAAGCGAGATGTTGAATGGGAAACCTGTGTTCCTGCAACAGATATTAGTTGGAAACAAATTGCAGAACCTGTAATGAAACTTTATACTGAAACAACTGATGGATCCACCATTGAAGATAAGGAGACTGCACTAGTTTGGTGCTATGAGGATGCAGACCCAGATTTTGGATCATGCCAAGCTAAGGAACTTCTTGATCATCTCGAGAGTGTCCTTGCAAATGAACCAGTAACAGTCAAAAGTGGCCAGAATAATGTTGAGGTTAAACCACAGGGTGTAAGCAAGGGACTAGTGGCCAAACGCCTACTTTCTGTCATGCAAGAAAAGGGAATGTCACCTGATTTTGTTTTGTGTATAGGAGATGACAGGTCTGATGAAGACATGTTTGAGAACAAAAAGTTCCAAGTTAAGCTCAGGAAAGTTGATGGTGAAAGTGCACCCTGGGCAATTGTTGATGAGCTGAAAGTTATCAGGGACGTATTGTTCTAA 2718 0.4124 MLSTPLLLITDLTPALLAISCFVISHSLNSGLVLEDPELKTQPCSLHTLCSLPILLIWICPFGFNRLWTLFLGSIGMVSRSYSNLLELASGEAPSFGLMNRRIPRIMTVAGLISDVDDDTVESVCSDRSSSSVHRDRIIIVANQLPIRAQRKPDGNRNWSFNWDENSLLQLKDGLGDDDIEVIYVGCLKEDVHPNEQDEVSQILFENYKCVPTFLPPDQFTRYYHGFCKQQLWPLFHYMLPLSPEHGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVNIKILPIGIHMGQLQSVLSLPETEEKVCDLIRQFSDQGRTMLLGVDDMDIFKGISLKLFAMEQLLIQHPEYQGQVVLVQIANPARGRGKDVKEVQTETKATVKRINETFGKPGYDPVILIEEPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNETLDKVLGLASSPKKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALGMADSEKQLRHEKHYRYVSTHDVGYWARSFLQDLERACSDHVRRRWWGIGFGLSFRVVALDPNFRKLSMEHIVSAYKRTTTRMILLDYDGTLMPQASIDKSPTSKSIEILNSLCSDKKNMVFLVSARSRKTLSEWFSPLENLGIAAEHGYFLRMKRDVEWETCVPATDISWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNNVEVKPQGVSKGLVAKRLLSVMQEKGMSPDFVLCIGDDRSDEDMFENKKFQVKLRKVDGESAPWAIVDELKVIRDVLF* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00155 905 CDD GT20_TPS 137 625 IPR001830 GO:0003824|GO:0005992
Rops1g00155 905 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 130 390 - -
Rops1g00155 905 Gene3D Glycogen Phosphorylase B; 391 609 - -
Rops1g00155 905 FunFam Alpha,alpha-trehalose-phosphate synthase 392 609 - -
Rops1g00155 905 SUPERFAMILY HAD-like 672 899 IPR036412 -
Rops1g00155 905 Gene3D - 754 834 - -
Rops1g00155 905 Gene3D Glycogen Phosphorylase B; 129 390 - -
Rops1g00155 905 NCBIfam HAD-IIB family hydrolase 673 874 IPR006379 -
Rops1g00155 905 Pfam Trehalose-phosphatase 675 877 IPR003337 GO:0003824|GO:0005992
Rops1g00155 905 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 801 894 - -
Rops1g00155 905 Gene3D - 674 878 IPR023214 -
Rops1g00155 905 CDD HAD_TPP 674 873 - -
Rops1g00155 905 NCBIfam trehalose-phosphatase 672 874 IPR003337 GO:0003824|GO:0005992
Rops1g00155 905 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 136 628 - -
Rops1g00155 905 FunFam Trehalose-6-phosphate synthase 2 755 834 - -
Rops1g00155 905 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 104 876 IPR001830 GO:0003824|GO:0005992
Rops1g00155 905 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 671 788 - -
Rops1g00155 905 Pfam Glycosyltransferase family 20 137 625 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00155 Rops-Chr1 4616411 4620982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00155 77 873 Trehalose Biosynthesis Gene Families AT1G68020 81.504 0.0 1380
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00155 1 4616411 4620982 Rops1g00155 1 4616411 4620982 ECH