Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00126 ATGGATGAAAGAAGAGATTTTGCACTTACCCAGATGAGGAAGTCTGTTGAGAAGTTTGGTTCTTCAGCAGAGGGGTATGGGGACCCTACACTGATGAGGTTCTTGATTGCTCGATCTATGGAGCCAGATAAAGCAGCAAAGATGTTTGTACAGTGGCTAAACTGGAGGGCTACTATGGTGCCTAATGGGTTCATTTCAGATTCTGAAGTTTCAGATGAACTGGAAACTAGAAAGATCTTTTTGCATGGTTTGTCTAAGGATAAGTACCCTGTGATGATTGTCCAAGCAAGCAGACATTTTCCTTCCAAGGATCAGATTCAATTCAAGAAATTTGTTGTACATCTACTGGACAAGACAATTGCAAGTGCTTTCAAAGGAAGGGAGATAGGAAATGAACAGTTGATTGGGATTCTTGATCTGCAGAATATTTCATATAAAAATATTGATGCACGTGGGTTAATCACTGGATTTCAATTTTTACAGGCTTACTACCCTGAACGTCTAGCAAAGTGTTATATTTTACAAATGCCATGGTTTTTTGTGAGTTGTTGGAGACTAGTTTCTCGCTTCCTAGAGAAGGCAACACTAGAAAAGATTGTAATTGTAAGCAATGAGGATGAGAGAAGGGAGTTTATAAAAGAGGTTGGTGAAGAGATTCTCCCAGAAGAGTATGGTGGAAAAGCAAAGCTTGTAGCTATCCAAGATGTTGAATTGACACCACTGGAAAATGGAACAACAAATTAA 744 0.3911 MDERRDFALTQMRKSVEKFGSSAEGYGDPTLMRFLIARSMEPDKAAKMFVQWLNWRATMVPNGFISDSEVSDELETRKIFLHGLSKDKYPVMIVQASRHFPSKDQIQFKKFVVHLLDKTIASAFKGREIGNEQLIGILDLQNISYKNIDARGLITGFQFLQAYYPERLAKCYILQMPWFFVSCWRLVSRFLEKATLEKIVIVSNEDERREFIKEVGEEILPEEYGGKAKLVAIQDVELTPLENGTTN* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00126 247 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 67 232 IPR001251 -
Rops1g00126 247 Pfam CRAL/TRIO domain 75 226 IPR001251 -
Rops1g00126 247 Gene3D - 1 240 IPR036865 -
Rops1g00126 247 PANTHER OS03G0850700 PROTEIN 6 236 - -
Rops1g00126 247 CDD SEC14 80 227 IPR001251 -
Rops1g00126 247 SUPERFAMILY CRAL/TRIO N-terminal domain 2 65 IPR036273 -
Rops1g00126 247 SUPERFAMILY CRAL/TRIO domain 67 229 IPR036865 -
Rops1g00126 247 SMART sec14_4 73 229 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00126 Rops-Chr1 3652056 3657871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00126 24 222 Acyl Lipid Metabolism Gene Families AT1G55840 25.926 2.99e-15 72.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00126 1 3652056 3657871 Rops1g00126 1 3652056 3657871 ECH