Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00124 ATGCCTGCGTCGGTGCAGAAAGTGGCGCACTCTAGCACGAGCTCAGGTGACACCTGCACTGGTGCGGCGGCTGCGGCCGCCTCCACAGAGTTCCCGGCGGGTCTTAGGGTTCTCGTCGTCGATGATGACGCCATCACCTTGAAGATTATCGAGCGAATGTCCATTCGCTGCCATTATCGCGTTACCACATGCTCTGAGGCTACTGTTGCTTTGAATATTCTGCGAGAGAGGAAAGGCTGTTTTGATGTGGTACTGAGTGATGTTCATATGCCAGACATGGATGGCTACAAACTCCTTGAACATGTTGGGTTGGAAATGGACCTTCCTGTTATTATGATGTCTGCTGATGGTACAACAAAAGCTGTCATGAAGGGAATTAGACATGGGGCTTGCGATTATTTGATTAAGCCTGTACGTGAGGAAGAACTAAGGAATATATGGCAGCATGTTGTTAGGAAAATTTGGAATGGAAATAAAGAGCATGAAAATTCTGGTAGCATGGAAGAAAATGATCGGAATAAACGGGGGAATGATGATAATGAACATACTTCTTCTGTTGTTGATGCAACTGAAGGAATCGTTAAAGCACCCAAAAAGAGGAGCACTTTAAAAGAAGAAGAAGATGTTGAATTGGAGAATGATGATCCATCTACATCTAAGAAGCCCCGTGTAGTGTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTAGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACAAGGGAAAATGTTGCAAGTCATTTGCAGAAATTTAGACTTTATTTGAAGCGATTAAGTGGAGTGTCACAGCAACAGAATGGGATGCTAAATACAGTTCCTGGGACTATGGAATCCAAGCTGGGTGCTTCTGGAAGATTTGATATACAAGCTCTGGCCGCTGCTGGCCATGTTCCCCCGGAAACACTTGCAGCTCTTCATGCTGAGCTCTTAGGTCACCCAGTAACTAACATAATGCCTGCAGTGGACCAGACTACCCTATTGCAAGCATCCATACAGGGGCCAAAACATTCTCATACTGATGATCATGCCGTGGCATATGGTCAGCCTCATGTAAAATGTCCTTCCAACATTGTGAAGAATTTCCCTCAGTCCATTGTAGATGATACATCATCAGGATATGGAGCATGGCCATCATCTAATACAATTGGTTCAATGGGACCGAATAGCAGTGTTGGAAGGTTGGGTGTTCAGAATAATAACATGCTGATGGATATATTGCAGCACCAACAAAGGCAGCAGCACCAGCACCAGCAAAAACAACAGCAACAGCTGCAGCAGCAGACACTGATACATGATCAAAGTCATTCAATTAATGTTCAACCATCTTGCTTGGTGGTTCCCACTCAATCTTCTGACACTTTCCAGGCGAGGAATAGTCTTGCTTCTGTTAACCAGGATTGCAGTTTAGGCAGGAATGCCATTATTGATTATAGTCTATTGTCACAAAAGTCAAATAATTCATTGAGTATATCTCAATATCCTGGTGGGGACACCAAAGCTAGAGGTGTTCTCTGTGGGTATAATACTCCCTCCATTTCTCCTCAGATGTCCTCTTGTTCAATAGGATCTAGCAACAGCAATGTTCAGCAAATTCAAAACTCTGCTTCAACATTTGGTGCTACGAGACCGTTGCCTGGCCTTTTGCCCATGACTGATACACAAGTTCCGTATGGTATTAAATCTGGTGATTCATTAGCTCAAGTATGTCTTAGGAATCTTGGATTTAATGGCAAAGGCACCATTGAAATTGAACCATCTGGAAGTGATTTTAGACAAATGAAAGTATCTGTACATAGCAATGTTAACACAATGAAGGAGGAGCCAAATTTTATCAGTAATTCAAAAGTGAGCCATCCATTCGTACAGAGATATCCATCTCATGATCTTTCAAGTGTGTTCACCGAATAG 1971 0.4328 MPASVQKVAHSSTSSGDTCTGAAAAAASTEFPAGLRVLVVDDDAITLKIIERMSIRCHYRVTTCSEATVALNILRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSADGTTKAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKIWNGNKEHENSGSMEENDRNKRGNDDNEHTSSVVDATEGIVKAPKKRSTLKEEEDVELENDDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVSQQQNGMLNTVPGTMESKLGASGRFDIQALAAAGHVPPETLAALHAELLGHPVTNIMPAVDQTTLLQASIQGPKHSHTDDHAVAYGQPHVKCPSNIVKNFPQSIVDDTSSGYGAWPSSNTIGSMGPNSSVGRLGVQNNNMLMDILQHQQRQQHQHQQKQQQQLQQQTLIHDQSHSINVQPSCLVVPTQSSDTFQARNSLASVNQDCSLGRNAIIDYSLLSQKSNNSLSISQYPGGDTKARGVLCGYNTPSISPQMSSCSIGSSNSNVQQIQNSASTFGATRPLPGLLPMTDTQVPYGIKSGDSLAQVCLRNLGFNGKGTIEIEPSGSDFRQMKVSVHSNVNTMKEEPNFISNSKVSHPFVQRYPSHDLSSVFTE* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00124 656 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 434 IPR045279 GO:0009736
Rops1g00124 656 SMART REC_2 35 147 IPR001789 GO:0000160
Rops1g00124 656 NCBIfam myb-like DNA-binding domain, SHAQKYF class 221 274 IPR006447 GO:0003677
Rops1g00124 656 Gene3D - 29 156 - -
Rops1g00124 656 MobiDBLite consensus disorder prediction 429 449 - -
Rops1g00124 656 FunFam Two-component response regulator 217 280 - -
Rops1g00124 656 MobiDBLite consensus disorder prediction 158 185 - -
Rops1g00124 656 MobiDBLite consensus disorder prediction 193 207 - -
Rops1g00124 656 SUPERFAMILY Homeodomain-like 218 278 IPR009057 -
Rops1g00124 656 ProSiteProfiles Response regulatory domain profile. 36 151 IPR001789 GO:0000160
Rops1g00124 656 MobiDBLite consensus disorder prediction 158 220 - -
Rops1g00124 656 Pfam Myb-like DNA-binding domain 223 271 IPR001005 -
Rops1g00124 656 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 218 277 IPR017930 -
Rops1g00124 656 SUPERFAMILY CheY-like 34 155 IPR011006 -
Rops1g00124 656 FunFam Two-component response regulator 35 172 - -
Rops1g00124 656 CDD REC_typeB_ARR-like 37 151 - -
Rops1g00124 656 Gene3D - 217 280 - -
Rops1g00124 656 Pfam Response regulator receiver domain 37 146 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00124 Rops-Chr1 3585270 3591308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00124 69 334 Response Regulator Gene Family AT3G16857 54.770 4.60e-92 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Rops1g00124 Response_reg 1.1e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00124 1 3585270 3591308 Rops1g00124 1 3585270 3591308 ECH