Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00117 ATGGCCATCAAGACTCTAGTTTTGGGTGCTGGTCAAGAGGTTGGGAAGAGTTGCGTGGTGGTTACCATCAATGGGAAGCGAATCATGTTCGATTGCGGAATGCACATGGACCCTGATCGCCATCCATACCCTGATTTCTCTCTCATCTCTCCCTCTGGCCATTTTGATGATGCCCTCTCTTGCGTCATCATCACTCATTTTCACTTGGACCATGTTGGGGCGTTGGCTTACTTCACTGAAGTTTGCGGGTATCACGGACCAGTCTATATGACGTACCCTACAAAAGCTTTGGCTCCATTGATGCTGGAAGACTATCGGAAAGTGCTGGTTGAACGTCAGGGCGAGGAAGACGTATTCACTTCTGATCATATTGCTGAGTGCATGAAGAAAGTTATTGCTGTAGATCTGAAGCAGACCGTGCAAGTAGATGAAGACCTGCAGATACGTGCATATTATGCAGGACATGTTATTGGAGCTGCAATGTTCTATGCGAAAGTGGGAGACACAGAAATGGTTTATACAGGAGACTACAATATGACACCAGATAGACACCTTGGAGCAGCTCAAATTGATCGACTACGACTTGACCTTCTTATAACTGAATCCACATATGCGACTACAATACGTGACTCAAGATATGCTCGTGAGAGGGAATTTCTCAAAGCTGTTCATAAATGCGTTTCTGGTGGAGGAAAGGTGCTTATTCCAACGTTTGCTCTTGGAAGAGCTCAGGAACTATGCATTTTGTTGGAAGACTACTGGGAGCGCATGAATTTGAAGGTTCCTATCTACTTCTCGTCAGGTTTAACTATTCAAGCTAATATGTATTATAAGATGCTTATTAGTTGGACAAGCCAGAAGATTAAAGATACATACTCTACACATAATGCATTTGATTTTAAGAATGTTCAAAATTTTGAAAGGTCTATGATAGATGCTCCTGGTCCTTGTGTTCTCTTCGCCACTCCTGGGATGTTAAGAGGTGGATTTTCACTTGAAGTTTTTAAGCACTGGGCACCGTCCGAAAATAACCTTATTGCTTTGCCTGGGTATTGTGCGGTTGGAACAGTAGGACGTAAATTAATGTCTGGTAAGCCCAGCAAAATTGATTTGGATCCTGATACTCAAATAGATGTGCGTTGCCAGATTCATCAATTGGCTTTTAGTCCTCACACCGATTCTAAAGGGATAATGGATCTTGTAAAATTTCTCTCCCCAAAGCATGTTATATTAGTGCATGGCGAGAAGCCTAAAATGGCCTCTCTTAAAGAAAAAATTCATTCTGAATTGGGGATTCCATGTCATTACCCTGCAAATCATGAAACCGTATCCATTCCTTCGACTCACTATGTAAATGCAGAAGCCTCTTCCACTTTCATTCAGAATTGCTTGAATCCAAATTTCAAGTTTCAGAAATGCAATTCAGTGGACATCTGTAACTCTACTTTGATAGACAGAAACTTAATGCCTGAACTTCAAGTTAAAGATGAAAGAGTAGCAGAAGGAGTTTTGGCTGTGGAGAAAAGCAAAAAGGCAAAAATTGTACACCAGGATGAGCTTTTGCTCATGTTAGAGGAAAAGAAGTCTGAGGTTTAG 1596 0.4173 MAIKTLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMDPDRHPYPDFSLISPSGHFDDALSCVIITHFHLDHVGALAYFTEVCGYHGPVYMTYPTKALAPLMLEDYRKVLVERQGEEDVFTSDHIAECMKKVIAVDLKQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDTEMVYTGDYNMTPDRHLGAAQIDRLRLDLLITESTYATTIRDSRYAREREFLKAVHKCVSGGGKVLIPTFALGRAQELCILLEDYWERMNLKVPIYFSSGLTIQANMYYKMLISWTSQKIKDTYSTHNAFDFKNVQNFERSMIDAPGPCVLFATPGMLRGGFSLEVFKHWAPSENNLIALPGYCAVGTVGRKLMSGKPSKIDLDPDTQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMASLKEKIHSELGIPCHYPANHETVSIPSTHYVNAEASSTFIQNCLNPNFKFQKCNSVDICNSTLIDRNLMPELQVKDERVAEGVLAVEKSKKAKIVHQDELLLMLEEKKSEV* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00117 531 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER 4 531 - -
Rops1g00117 531 SMART Lactamase_B_5a 15 231 IPR001279 -
Rops1g00117 531 Pfam Beta-Casp domain 243 361 IPR022712 -
Rops1g00117 531 Gene3D - 8 426 IPR036866 -
Rops1g00117 531 Gene3D - 211 389 - -
Rops1g00117 531 SUPERFAMILY Metallo-hydrolase/oxidoreductase 3 446 IPR036866 -
Rops1g00117 531 SMART Beta_Casp_2 243 361 IPR022712 -
Rops1g00117 531 FunFam Integrator complex subunit 11 isoform X3 8 233 - -
Rops1g00117 531 CDD INTS11-like_MBL-fold 6 202 IPR041897 -
Rops1g00117 531 Pfam Metallo-beta-lactamase superfamily domain 21 190 IPR001279 -
Rops1g00117 531 FunFam Cleavage and polyadenylation specificity factor subunit 3-II 211 391 - -
Rops1g00117 531 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 377 437 IPR011108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00117 Rops-Chr1 3411005 3433578 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00117 1 3411005 3433578 Rops1g00117 1 3411005 3433578 ECH