Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00116 ATGTCATCACGAACCAACGAAACGGAGGCGCAGGAGTCTCACGCGCCGCTACTCCGCTCGCGCCACGAAGGCGGGGGGCGGGCTCCAACCCTCGCGCTCCTGCTGGGACGCGCCTCCGGTCGCCGCGGCCCTTCGATGCTTGTCCGTGAGACGGCGGCGCGTGAGCTTGAGGAGCGGCGTGCCGACTGGGGATACTCGAAGCCGGTGGTGGCGCTCGACATGTCCTGGAATATGGCCTTTGTTGTGGTCTCGGCGGCGATGCTGGCGTGCACCGTCGACGAGAGTCCTAACACGCCGATCCGTATCTGGATCATCGGCTACGCGCTTCAGTGCCTGGTGCACGTGGTTCTGGTGTGGCTCGAATACCGGCGTCGGAGTCGGAGGGAGTCGTGGCGGCGGAGGCAGAGGGAATTCGACGCCGGTAGTACCGACGGCAACGACAGCGACGACGGCGACGGGGACTCGTCTCGCTCCGGTTGCACAAAACGATGTGAATCAATAAATACTGGGGTTTCATTCCTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATACTTCTACAAGATGCTCCACGTTTGTACTGGTTGGCTGTTGTCTTCCTGGCATTTGATGTCTTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTGTGTTGTTGTTTGCCCTGCATCATTGCTATTCTTTATGCTATTGCAGGACAGGAAGGTGCATCAGAAGCAGATCTTAGTATACTTCCAAAATATAGATTTCGAATATTAAGCAACGAGGAAAAACCTAGTAGTGGTGGAGCTGGATCAATGGTTCCCATAGAAACTAACAGTGGTTACTTGGCAAATGAACGAATTCTTCTACCTGAGGATGCGGAATGCTGTATATGCCTCTGTTCGTATGAGGATGGAGTCGAGCTCCATGCTCTTCCCTGCAACCATCATTTTCATTCTTTGTGCATAGTAAAATGGCTAAAGATGAATGCAACCTGTCCTCTTTGCAAGTATAATATTCTCAAGGGAAACGAACAAGTCTAA 1053 0.5299 MSSRTNETEAQESHAPLLRSRHEGGGRAPTLALLLGRASGRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAAMLACTVDESPNTPIRIWIIGYALQCLVHVVLVWLEYRRRSRRESWRRRQREFDAGSTDGNDSDDGDGDSSRSGCTKRCESINTGVSFLWWMVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAIAGQEGASEADLSILPKYRFRILSNEEKPSSGGAGSMVPIETNSGYLANERILLPEDAECCICLCSYEDGVELHALPCNHHFHSLCIVKWLKMNATCPLCKYNILKGNEQV* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00116 350 PANTHER TARGET OF ERK KINASE MPK-1 38 348 - -
Rops1g00116 350 SMART ring_2 299 339 IPR001841 -
Rops1g00116 350 ProSiteProfiles Zinc finger RING-type profile. 299 340 IPR001841 -
Rops1g00116 350 Pfam Ring finger domain 298 340 IPR001841 -
Rops1g00116 350 CDD RING-H2_PA-TM-RING 298 340 - -
Rops1g00116 350 FunFam E3 ubiquitin protein ligase RIE1 279 347 - -
Rops1g00116 350 MobiDBLite consensus disorder prediction 1 25 - -
Rops1g00116 350 SUPERFAMILY RING/U-box 287 344 - -
Rops1g00116 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 348 IPR013083 -
Rops1g00116 350 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00116 Rops-Chr1 3380809 3385926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00116 3 349 C3H Transcription Factor Family AT1G68070 69.452 1.40e-178 497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00116 1 3380809 3385926 Rops1g00116 1 3380809 3385926 ECH