Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00115 ATGCCGTCGCAGGCAGCGACAATGTCTGCCTTCAAAGCTCTCAGATCGTCAAAACTTGTCTCCTGGAAACCCACCGGGAGGCTTCAACAAACCCTAGCGGGATGCGTGGAGCGGCGTGGCACGTCTTTGCATTCGGGAAACGTTTCGACGGTGAGATTGTGGCCGGCATTTGCAGGCCAAGGGAGGAACTTTGATTTTCGATCCAATTCCATTCCGGCGTCCGTTGATTTTGTTCAGGTCTCGCCTCTCTGCACTACTCTCTGTAAAGACGGTTTTCGAATTCGAACTGTAGAGCACTTGCTTTCTGCTTTGGAGGCCATTGGTGTTGATAATTGCAGAATTGAGATAGAGAATTTGGATGATGCTCGATGCCACGATGCCGAGATTCCTATATTTGATGGATCAGCAAGGGAATGGGTGGCAGCAGTGGAAGAAGTTGGTTTAAAGGTAGCAATTGATCTTGATGGCAAAAGCTGTGAGAAATCAGCACCACATGTGAATGAACCAATGCATGTTTGGAGGAATGATTCTTTTGTTGCTGCATTTCCTTCAGAAGTGGTTCGAGTAACTTATGGCATCAACTTTCCGCAGGCACCTGCTATTGGCTGCCAGTGGTTTTCTACAACCCCCTTGGATAATTTGGTTTATCCCATGCAGATAGCTTTGTCAAGAACCTTCTGCATTTACGAGGAGGTTGAGCAAATGCGCAATGCTGGACTTAACAAAGGGGGTTCTCTAGAAAATGCAATTGTGTGCAGTGCCAGTAAAGGTTGGTTGAATCCACCTCTGCATTTCAGTGATGAACCATGTCGTCACAAGATCTTAGATCTTATTGGTGATCTCTCGCTGTTTGCTCAGTTTGGTAATCAAGGACTCCCGGTGGCACACATCATTGCTTACAAGGGTGGCCATGCATTGCATGCTGATTTGGCACGCTATCTGATGGGAATCTGA 954 0.4717 MPSQAATMSAFKALRSSKLVSWKPTGRLQQTLAGCVERRGTSLHSGNVSTVRLWPAFAGQGRNFDFRSNSIPASVDFVQVSPLCTTLCKDGFRIRTVEHLLSALEAIGVDNCRIEIENLDDARCHDAEIPIFDGSAREWVAAVEEVGLKVAIDLDGKSCEKSAPHVNEPMHVWRNDSFVAAFPSEVVRVTYGINFPQAPAIGCQWFSTTPLDNLVYPMQIALSRTFCIYEEVEQMRNAGLNKGGSLENAIVCSASKGWLNPPLHFSDEPCRHKILDLIGDLSLFAQFGNQGLPVAHIIAYKGGHALHADLARYLMGI* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00115 317 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 8 315 IPR004463 GO:0008759|GO:0009245
Rops1g00115 317 SUPERFAMILY Ribosomal protein S5 domain 2-like 168 315 IPR020568 -
Rops1g00115 317 Gene3D lpxc deacetylase, domain 2 165 317 IPR011334 GO:0008759|GO:0009245
Rops1g00115 317 NCBIfam UDP-3-O-acyl-N-acetylglucosamine deacetylase 29 313 IPR004463 GO:0008759|GO:0009245
Rops1g00115 317 SUPERFAMILY Ribosomal protein S5 domain 2-like 28 149 IPR020568 -
Rops1g00115 317 Gene3D lpxc deacetylase, domain 1 27 153 IPR015870 GO:0008759|GO:0009245
Rops1g00115 317 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 29 315 IPR004463 GO:0008759|GO:0009245
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00115 11 314 Carbohydrate Esterase AT1G25054 64.474 3.43e-142 402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00115 1 3346952 3358791 Rops1g00115 1 3346952 3358791 ECH