Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00070 ATGGAGAGAGATTTCATGGGTCTACGCTCAAAAGAATCATTATCTGTGGCTAAGGAAGAGATGAACAATGATGGAAGCAAAGACTCAGGCTTCTCAAAAGGTTCAGTGGTAAAATGGTCCTTCTTGAATGAAGTCGCTGCTCATCGGCATTTGATGTCTTTCAATGTTTCTGAAAATGATAAGGCTAAAAGGATGGCATCTGATTCCATCACATCTACTGGTTTTTTGGCTATCCCAAGTCTAGATGCATTTGACTCTGTTAAAAAATATGCTGGAGGTGAACTACAGAAATCTTTCAATCATGATGGACAAGGTGGCATTCATTTTTCGCTGACTCCATATCCTGTGAATCGTCCTGTGAATCAAGCAATTTCAGTTTCCATGGGAAATCCATTCCCAAAGAATCATTTTGCAACTGTTGGTCAGAATATGAATGGTGCTAATGTGAAGCAACCACTACTTGGGAAAATCCCTGTTACAGCACCTCATTCAGTTGTTCCCATTGTTGGTCATGTTGCTGGATTGACTGAACCATGTAACAGTGTGAAACCATCTGCACCTGCTCCTCAACTTACCATCTTCTATGCGGGTACTGTGAATGTATTTGATGATATCTCCCCTGAGAAGGCACAAGCTATCATGTTGTTGGCTGGGAATGGCTTATCTGCAGCTTCTAACATGGCACAGCCCAAAGTTCAGGCACCCAGCTTGAAGTTGGCAGCAGATGATGGTGTACCTGTGAGTCAACCCATAAATATACCACCCTCCTCCGGTCTTTCAAGTCCCTTATCCGTTTCTTCACATTCCAGTGCACAGTCAGGAAGTGGCTCAAGCAGCAATGATCAACTTCCGGTAGCTAAAACATCTGGAGGTCCCACCACTCCTGTTAGCAAAGTGGAGACTCCAAAAGTAGTCAATGCAAACACCATGTTTCAATCAGCTGTACCGCAGGCTCGCAAAGCATCATTGGCTCGATTTTTGGAGAAGCGCAAGGAAAGGGTGATGAATACAGCACCATATAACCTCAACAAGATGTCTGTGGATGTACCACTGCAGAATGCAATGGTTGCTGACATCTCTGCAACTACTGGTACCAATACTCCTTCAACCAAGCAAGGATAG 1122 0.4385 MERDFMGLRSKESLSVAKEEMNNDGSKDSGFSKGSVVKWSFLNEVAAHRHLMSFNVSENDKAKRMASDSITSTGFLAIPSLDAFDSVKKYAGGELQKSFNHDGQGGIHFSLTPYPVNRPVNQAISVSMGNPFPKNHFATVGQNMNGANVKQPLLGKIPVTAPHSVVPIVGHVAGLTEPCNSVKPSAPAPQLTIFYAGTVNVFDDISPEKAQAIMLLAGNGLSAASNMAQPKVQAPSLKLAADDGVPVSQPINIPPSSGLSSPLSVSSHSSAQSGSGSSSNDQLPVAKTSGGPTTPVSKVETPKVVNANTMFQSAVPQARKASLARFLEKRKERVMNTAPYNLNKMSVDVPLQNAMVADISATTGTNTPSTKQG* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00070 373 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 104 349 IPR040390 -
Rops1g00070 373 ProSiteProfiles Tify domain profile. 184 219 IPR010399 -
Rops1g00070 373 MobiDBLite consensus disorder prediction 248 299 - -
Rops1g00070 373 Pfam tify domain 187 218 IPR010399 -
Rops1g00070 373 Pfam Jas motif 316 340 IPR018467 -
Rops1g00070 373 MobiDBLite consensus disorder prediction 250 299 - -
Rops1g00070 373 SMART tify_2 184 219 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00070 Rops-Chr1 2003106 2006757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00070 37 346 Tify Gene Family AT3G17860 34.756 1.70e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Rops1g00070 tify 3e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00070 1 2003106 2006757 Rops1g00070 1 2003106 2006757 ECH